Workshop: Analysing and Visualizing Data with R and Galaxy

18-20 May 2020, Online

Summary

Workshop is focused on using tools such as Galaxy and R Studio to analyze and visualize NGS data.

It consists of three parts and includes:

Day 1: Introduction to the web-based platform Galaxy. Lecturer Dr. Vesselin Baev

• 11.00-12.00 Introduction to Galaxy (online)
• 12.00-13.00 Visualization of RNA-Seq results with Volcano Plot (hands-on)
• 13.00-13.30 Online support
• 13.30-15.00 Visualization of RNA-Seq results with heatmap (hands-on)
• 15.00-15.30 Online support

Day 2: RStudio and R graphics system. Lecturer Dr. Zdravka Ivanova

• 11.00-11.30 Introduction to RStudio Cloud and R graphics system (online)
• 11.30-13.00 Getting started with RStudio Cloud and working with traditional R base plots.
• 13.00-13.30 Online support
• 13.30-15.00 Working with lattice and ggplot2 R packages. R modeling (hands-on)
• 15.00-15.30. Online support

Day 3: Introduction machine learning. Lecturer Dr. George Minkov

• 11.00-11.30 Introduction machine learning (online)
• 12.00-13.30 Basics of machine learning (hands-on)
• 13.00-13.30 Online support
• 14.00-15.00 Introduction to deep learning (hands-on)
• 15.00-15.30 Online support

Acknowledgements

This workshop is supported by funding from project PlantaSYST, as well as the IMBB Plovdiv.

• Dr. Vesselin Baev, The Institute of Molecular Biology and Biotechnology (IMBB, University of Plovdiv), Plovdiv, Bulgaria.
• Dr. George Minkov, The Institute of Molecular Biology and Biotechnology (IMBB, University of Plovdiv), Plovdiv, Bulgaria.
• Dr. Zdravka Ivanova, The Institute of Molecular Biology and Biotechnology (IMBB, University of Plovdiv), Plovdiv, Bulgaria.