Publications - Center of Plant Systems Biology and Biotechnology

2026

Ali A., Zareen S., Bader Z.E., Park J., Khan I.U., Park K., Albakri N., Bae M.J., Bressan R.A., Pardo J.M., Yun D.J., Xu Z.Y. (2026)

A GPS2-like protein interacts with HOS15 and HDA6 to form a repressor complex that regulates ABA signaling and drought adaptation in Arabidopsis.

Plant Communications. 101843. • IF 13.7

Ali A., Zareen S., Park J., Bressan R.A., Yun D.J. (2026)

Multifaceted role of SOS3 in regulating plant development and salinity tolerance.

Plant Physiology and Biochemistry. 232: 111139. • IF 6.2

Angelov M., Ivanova V., Wittenberg M., Stoyanov P., Mladenov R., Mladenova T., Gyuzeleva D., Radoukova T., Todorov K., Gechev T. (2026)

Comparative metabolome and metallomic analyses of three organs from Cistus creticus.

Planta. 263: 115. • IF 4.4

Asad F., Zeb A., Shahid S., Ahmad S., Wittenberg M., Angelov M., Yaseen T., Ali A., Gechev T., Ali S. (2026)

Biostimulants from Rosa alba L. optimize growth and physiological processes of Zea mays L.

Frontiers in Plant Science. 17: 1731231. • IF 5.9

Baccolini C., Ishihara H., Feil R., Perez de Souza L., Alseekh S., Walther D., Fernie A.R., Stitt M., Lunn J.E., Arrivault S. (2026)

Exploring the diversity of the CO2-concentrating mechanism (CCM) in different C4 subtypes.

Journal of Experimental Botany. erag116. • IF 6.5

Balabanova D., Harizanova A., Koleva-Valkova L., Petrov V., Vassilev A. (2026)

A protein hydrolysate mitigates the adverse effect of chilling stress on cucumber plants.

Stresses. 6(1): 5.

Beedubail SPS., Farrona S., Wittenberg M., Gechev T., Sujeeth N. (2026)

Biostimulant seed priming enhances germination, early field emergence and osmotic stress responses, accompanied by a distinct metabolic signature in Brassica napus L.

Plant Stress. 22: 101448. • IF 8.1

Daskalova E., Lee J.S., Zahmanova G., Minkov I. (2026)

Integrated symbiotic pleiotropy: Long non-coding RNAs and disordered proteins interweaving the functional layers of the eukaryotic cell.

International Journal of Molecular Sciences. 27(8): 3478. • IF 5.6

Dhanuskodi R., Dong Y., Matthew C., Gechev T., Dijkwel P. (2026)

The Rhizobium symbiosis in Medicago truncatula induces a priming-like response and enhances drought tolerance.

Plant Stress. 19: 101229. • IF 8.1

Dong J., Zhang L., Ouyang Q., Zhang F., Zheng W., Ferinie A.R., Song Y., Zhou K., Zhu Z., Yu Y. (2026)

Abscisic acid alleviates cadmium toxicity in oilseed rape plants by regulating its accumulation, subcellular distribution, and ascorbate-glutathione cycle.

Environmental and Experimental Botany. 244: 106354. • IF 4.7

Ibrahim R.M., Alseekh S., Haffelder J., Ramadan N.S., Abbas G.M., Fernie A.R., Ulber R., Zayed A. (2026)

Untargeted metabolomics, lipidomics, and GC–MS profiling reveal species-specific and culture-induced metabolic signatures in brown macroalgae.

Metabolomics. 96: 104748. • IF 3.4

Ibrahim R.M., Sedeek M.S., Li Z., Alseekh S., Fernie A.R., Farag M.A. (2026)

Impacts of cultivar, tissue type, and processing methods on sweet potato metabolome and antioxidant activity: integrating UHPLC-MS/MS, molecular networking, UV-Vis spectroscopy, and in vitro assays.

Food Chemistry. 524: 150170. • IF 10.4

Ilieva Y., Gupta S.,Wittenberg M., Ivanova V., Kazakov P., Alseekh S., Sujeeth N., Gechev T. (2026)

A plant biostimulant from Ascophyllum nodosum protects raspberry from heat-induced sunburn.

Plant Stress. 20: 101315. • IF 8.1

Jin M., Yan S., Wu Y., Zhai Z., Alseekh S., Chen Y., Huang W., Ma N., Tao K., Xiao K., Zhu Y., Yu Y., Shao Y., Jiang C., Liu X., Sun J., Qu Y., Wei W., Li W., Xu J., Luo J., Wang X., Zhuo L., Zhan J., Qiu F., Yang N., Xiao Y., Liu H.J., Fernie A.R., Yan J. (2026)

Multiomics analysis of primary metabolism reveals the genetic basis of nitrogen partitioning modulated by ZmAVT1A-1 in maize.

Nature Genetics. doi: 10.1038/s41588-026-02655-2. • IF 25.5

Kanojia A., Sujeeth N., Gupta S., Alseekh S., Petrov V., Gechev T. (2026)

Integration of physiological and molecular analyses reveals that a plant-based biostimulant delays drought-induced leaf senescence & improves maize yield.

Plant Physiology and Biochemistry. 234: 111328. • IF 6.2

Kazakov P., Atanasov D., Beluhova R., Mircheva-Topalova M., Ivanova A., Kazashka V., Gechev T. (2026)

Impact of leading plant research centers of excellence on the scientific and socio-economic development in Europe.

Frontiers in Research Metrics and Analytics. 11: 1770226. • IF 3.1

Krustanova S., Todorova M.N., Gerasimova V., Savova M.S., Stoyanov S., Popova M.P., Georgiev M.I., Alipieva K. (2026)

Stress endurance mediates the healthspan-promoting effect of two newly described iridoid glycosides from Verbascum nigrum ssp. abietinum in Caenorhabditis elegans.

Phytomedicine. 153: 157944. • IF 8.3

Kuhalskaya A., Li X., Lee J., Gonda I., von Steimker J., Bulut M., Karakas E., Fisher J., Krämer K., Rosental L., Wijesingha Ahchige M., Garbowicz K., Klemmer A., Ruß A.K., Donath A., Cuadros-Inostroza A., Boerjan W., Tieman D.M., Zamir D., Klee H.J., Alseekh S. (2026)

Genetic architecture of the tomato fruit lipidome.

PNAS Nexus. 5(1): pgaf401. • IF 3.8

Martínez Rivas F.J., Smith M.A., Zangishei Z., Alseekh S., Usadel B., Plaxton W.C., Fernie A.R. (2026)

Malate matters: disrupting bacterial-type phosphoenolpyruvate carboxylase (BTPC) rewires tomato fruit development.

Plant Physiology. 201(1). • IF 6.9

Mashabela M.D., Sibanyoni N.R., Mmotla K., Dubery I.A., Terefe T., Gechev T., Mhlongo M.I. (2026)

Integrated transcriptomics-metabolomics framework for predictive and translational biostimulant design: Insights into smart systems for sustainable agriculture.

Current Plant Biology. 48: 100639. • IF 5.1

Mihaylova L.V., Savova M.S., Todorova M.N., Tonova V., Binev B.K., Georgiev M.I. (2026)

Cycloastragenol improves fatty acid metabolism through NHR-49/FAT-7 suppression and potent AAK-2 activation in Caenorhabditis elegans obesity model.

International Journal of Molecular Sciences. 27(2): 772. • IF 5.6

Minkov P., Gechev T., Kanojia A. (2026)

Terrestrial plant- and algal-derived biostimulants as modulators of ROS and hormone networks in crop abiotic stress resilience.

Plants. 15(7): 992. • IF 4.7

Palankalieva A.P., Stoykova I.D., Georgiev M.I., Belcheva A.B. (2026)

Comparative cytocompatibility and oxidative stress analysis of green-synthesized nano-silver fluoride and silver diamine fluoride in human gingival fibroblasts.

Journal of Functional Biomaterials. 17(4): 195. • IF 5.2

Pérez-Mesa P.A., Pardo R.A., Alseekh S., Rojas-Contreras S., Sierra G.P., García D.E., Orejuela A., Lopez-Kleine L., Fernie A.R., Roda F. (2026)

Genetic basis of alkaloid divergence in the Solanaceae.

Plant Molecular Biology. 116(4):67. • IF 3.8

Sakaliyska K., Tonova V., Manev H., Koynarski T., Lukov G.L., Andonov A., Zahmanova G. (2026)

Beyond the meat of the matter: a systematic review and meta-analysis of the hepatitis E seroprevalence and food-borne transmission potential in the Balkans.

Viruses. 18: 736. • IF 3.8

Sierra G.P., Orejuela A., Orozco C.I., Pérez-Mesa P.A., Alseekh S., Fernandez-Hilario R., Fernández-Alonso J.L., Smith S.D., Fernie A.R., Roda F. (2026)

A new arborescent genus of Datureae (Solanaceae) from Colombia and Peru, with implications for alkaloid evolution.

Taxon. 75(2): e70130. • IF 3.4

Tiozon R.J.N., Fernie A.R., Sreenivasulu N. (2026)

Reconfiguring biofortification strategies to transform food systems and address micronutrient deficiency of the 21st century.

Journal of Integrative Plant Biology. doi: 10.1111/jipb.70305. • IF 12.5

Todorova M.N., Dyankov S., Savova M.S., Todorova V., Georgiev M.I., Ivanova S. (2026)

Echinophora tenuifolia L. subsp. sibthorpiana modulates stress response and mitochondrial quality under glucose stress in Caenorhabditis elegans.

Antioxidants. 15(3): 398. • IF 6.6

Todorova M.N., Savova M.S., Binev B.K., Georgiev M.I. (2026)

The chemically defined herbal mixture ADAPT-232 delays mitochondrial dysfunction and promotes healthspan through mitophagy-related pathways mediated by the DAF-16/NHR-49 axis.

Phytomedicine. 155: 158117. • IF 8.3

Vallarino J.G., Rosado-Souza L., Zhang Y., Ratcliffe R.G., Sweetlove L.J., Shameer S., Fernie A.R. (2026)

Mitochondrial glutamine synthetase overexpression in tomato source leaves increases assimilate export and fruit yield.

The Plant Cell. koag181. doi: 10.1093/plcell/koag181. • IF 13.5

van Rengs W.M.J., Fuentes R.R., Zangishei Z., Primetis E., Wang Y., Fernandes J.B., Susanto T., Lian Q., Effgen S., Huettel B., Alseekh S., Usadel B., Underwood C.J. (2026)

Wild tomato genome assemblies reveal structural variants and repeat content act as recombination barriers.

Nature Communications. 17: 5590. • IF 18.1

von Steimker J., Bulut M., Pozhvanov G., Bergmann S., Wendenburg R., Sun Y., Zhu F., Pieri A., Frascarelli G., Nanni L., Bellucci E., Bitocchi E., Papa R., Fernie A.R., Alseekh S. (2026)

GWAS identifies regulators of seed and leaf morphology in common bean, revealing OFP5 as a major seed size determinant.

The Plant Journal. 126(3): e70909. • IF 5.7

von Steimker J., Macho M., Wendenburg R., Lee J., Zemach I., Xu Y., Frohlich A., Sampathkumar A., Zamir D., Fei Z., Giovannoni J.J., Fernie A.R., Alseekh S. (2026)

Natural variation in SlGRF10 reveals a role in regulating tomato fruit weight.

Plant Physiology. 201(3): kiag465. • IF 8.2

von Steimker J., Rey E.L., Stanschewski C., Wendenburg R., Klemmer A., Macho M., Thirumalaikumar V.P., Saber N.O., Skirycz A., Fernie A.R., Tester M., Alseekh S. (2026)

Multi-tissue metabolic GWAS and drought-responsive multi-omics reveal the genetic basis of the quinoa metabolome.

Advanced Science. e76426. • IF 14.1

Wittenberg M., Ilieva Y., Gechev T. (2026)

Metabolome reprogramming during fruit ripening and post-harvest storage in ten crop species.

Metabolites. 16(2): 133. • IF 4.5

Zareen S., Ali A., Bae M.J., Albakri N., Park K.S., Yun H.S., Yun D.J., Park J. (2026)

Arabidopsis E3 Ligase HOS15 Regulates ABA and Drought Responses via DIL9 Degradation.

Journal of Plant Growth Regulation. DOI: doi.org/10.1007/s00344-026-12240-w. • IF 4.4

2025

Ali A., Usman M., Ali W., Khan N.Z., Aasim M., Staykov N., Ali A., Munir I., Gechev T. (2025)

Heterologous Expression of Bacterial Dehydrin Promotes Arabidopsis Tolerance to Cadmium and Arsenic Stress.

Genes. 16(12): 1413. • IF 2.8

Angelov M., Ivanova V., Stoyanov P., Mladenov R., Mladenova T., Gyuzeleva D., Zhelyazkova S., Radoukova T., Todorov K., Bogdanova S., Ivanova A., Wittenberg M., Petrov V., Gechev T. (2025)

Metabolome and essential element analyses of five underutilized European crops reveal their nutritional properties and otential to diversify the European food system.

Metabolites 15: 720. • IF 4.5

Arend M., Paulitz E., Hsieh Y.E., Nikoloski Z. (2025)

Scaling metabolic model reconstruction up to the pan-genome level: A systematic review and prospective applications to photosynthetic organisms.

Metabolic Engineering. 90: 67-77. • IF 6.8

Chen J., Zhang Y., Li Y., Liu Y., Li Q., Lv Z., Georgiev M.I., Liao P. (2025)

The last decade of medicinal plant genomics: Advances and challenges.

Engineering. DOI: https://doi.org/10.1016/j.eng.2025.09.024. • IF 11.6

Cetinkaya H., Staykov N., Gechev T., Secin Dinler B. (2025)

Investigation of physiological, metabolomic analysis, and HvSOS1 genes of priming with azelaic acid in barley seeds under salt stress.

Plant Physiology and Biochemistry. 229(Pt D): 110728. • IF 6.7

Dao O., Bertrand M., Alseekh S., Veillet F., Auroy P., Nguyen P.C., Légeret B., Epting V., Morin A., Cuiné S., Monteil C.L., Mackinder L.C.M., Burlacot A., Krieger-Liszkay A., Weber A.P.M., Fernie A.R., Peltier G., Li-Beisson Y. (2025)

The green algae CO₂ concentrating mechanism and photorespiration jointly operate during acclimation to low CO₂.

Nature Communications. 16(1) :5296. • IF 14.7

Efferth T., Zacchino S., Georgiev M.I., He R.R., Shen X., Albrecht U., Belwal T., Bhutia S.K., Chatterjee M., Chen J., Chen Z.Y., Cho W., Devi S.I., Eid A.H., Orhan I.E., Gao Y., Hosseinzadeh H., Hua Q., Khan H.,…Yücer R. (2025)

30^th Anniversary of Phytomedicine: Looking Back and Forth.

Phytomedicine. 149: 157525. • IF 8.3

Gechev T. (2025)

Genomics control of biostimulant-induced stress tolerance and crop yield enhancement.

Plant Journal. 123: e70382. • IF 6.2

Gonçalves B., Santos M., Silva V., Rodrigues A., Oliveira I., Lopes T., Sujeeth N., Guinan K.J. (2025)

Biostimulants in fruit crop production: Impacts on growth, yield, and fruit quality.

Horticulturae. 11(12): 1452. • IF 3.0

Hameed A., Khan M.A., Tahir MH.N., Lodhi M.S., Muzammil S., Shafiq M., Gechev T., Faisal M. (2025)

In Silico identification and characterization of SOS gene family in soybean: Potential of calcium in salinity stress mitigation.

PLoS One. 20(2): e0317612. • IF 2.9

Ivanova A., Bogdanova S., Petrov V., Gechev T. (2025)

Plants from Bulgarian botanical gardens: some selected species with potential for health food and medical applications.

Plants. 14(14): 2176. • IF 4.7

Ivanova-Kadiri i. (2025)

Marketing potential of behavioral genetics in the context of hyper-personalization.

Proceedings of the European Marketing Academy. 54: 126335. Scientific consultant: Prof. Vesela Kazashka, PhD.

Jahan T., Huda M.N., Zhang K., He Y., Lai D., Dhami N., Quinet M., Ali M.A., Kreft I., Woo SH., Georgiev M.I., Fernie A.R., Zhou M. (2025)

Plant secondary metabolites against biotic stresses for sustainable crop protection.

Biotechnology Advances. 79: 108520. • IF 12.5

Kazashka V., Ruseva M., Tabakova-Komsalova V. (2025)

Analysis of career motivation in a regional crop production cluster. 6th International Conference on Natural Products Utilization: from Plants to Pharmacy Shelf (ICNPU-2025, Bansko, Bulgaria)

Khan S., Rahama K.U., Gul H., Rauf M., Gechev T., Arif M., Ali A., Ali S. (2025)

Integrated biocontrol strategies using indigenous fungal endophytes Aspergillus fumigatus and Curvularia lunata against wheat stripe rust.

Frontiers in Microbiology. 16: 1683295. • IF 5.9

Koycheva I.K., Stoyanova E., Todorova B., Stoykova I.D., Savova M.S., Mihaylova L.V., Mihaylova N., Georgiev M.I. (2025)

Anti-psoriatic activity of biotechnologically produced Harpagophytum procumbens extract in an imiquimod-induced psoriasiform skin inflammation model.

South African Journal of Botany. 184: 936-950. • IF 2.3

López C.M., Alseekh S., Martínez Rivas F.J., Fernie A.R., Prieto P., Alamillo J.M. (2025)

CRISPR/Cas9 editing of two adenine phosphoribosyl transferase coding genes reveals the functional specialization of adenine salvage proteins in common bean.

Journal of Experimental Botany. 76(2) :346-362. • IF 6.5

López-Tubau J.M., Laibach N., Burciaga-Monge A., Alseekh S., Deng C., Fernie A.R., Altabella T., Ferrer A. (2025)

Differential impact of impaired steryl ester biosynthesis on the metabolome of tomato fruits and seeds.

Physiologia Plantarum. 177(1): e70022. • IF 3.6

Lu X., He Y., Weng W., Liu Z., Gao Y., Shi Y., Li W., Lai D., Zhao M., Jha R., Zhao H., Li G., Guan C., Shao S., Ruan J., Woo S.H., Ouyang Y., Quinet M., Georgiev M.I., Fernie A.R., Hou C., Zhang K., Liu X., Zhou M. (2025)

Domestication of tartary buckwheat shaped a regulatory module for seedling salt tolerance by targeting the magnesium transporter gene FtMGT2.

Advanced Science. 13(8): e11570. • IF 14.1

Maciejewska-Turska M, Georgiev M.I., Kai G., Sieniawska E. (2025)

Advances in bioinformatic methods for the acceleration of the drug discovery from nature.

Phytomedicine. 139: 156518. • IF 8.3

Marks R.A., Ekwealor J.T.B., Artur M.A.S., Bondi L., Boothby T.C., Carmo O.M.S., Centeno D.C., Coe K.K., Dace H.J.W., Field S., Hutt A., Porembski S., Thalhammer A., Pas L., Wood A.J., Alpert P., Bartels D., Boeynaems S., Datar M.N., Giese T., Seidou W..I, Kirchner S.M., Köhler J., Kumara S., Kyung J. Lyall R., Mishler B.D., Ndongmo T., Otegui S., Reddy V., Rexroth J., Tebele SM, VanBuren R., Verdier J., Vothknecht U.C., Wittenberg M.F., Zokov E., Oliver M.J., Rhee S.Y. (2025)

Life on the dry side: a roadmap to understanding desiccation tolerance and accelerating translational applications.

Nature Communications. 16(1): 3284. • IF 14.7

Munir S., Shahzad A.N., Rai A., Petrov V., Gechev T., Shokat S., Qureshi M.K. (2025)

Reactive oxygen species production and signal transduction in response to stress triggered by Alternaria elicitors in Brassicaceae.

Plant Molecular Biology. 115(6): 113. • IF 3.8

Nejamkin A., Decima C., Zhang Y., Luquet M., Galatro A., Del Castello F., Massa G.A., Feingold S., Fernie A.R., Lamattina L., Correa-Aragunde N., Foresi N. (2025)

Metabolic profiling reveals increased nitrogen remobilization in potato plants that express a cyanobacterial NO/NO2-producing enzyme.

Journal of Plant Growth Regulation. doi:10.1007/s00344-025-11740-5. • IF 4.4

Priboyska K., Todorova M.N., Gerasimova V.I., Savova M.S., Krustanova S., Petkova Z., Stoyanov S., Popova M.P., Georgiev M.I., Alipieva K. (2025)

Phytochemical Profiling and Anti-Obesogenic Potential of Scrophularia aestivalis Griseb. (Scrophulariaceae)

Molecules. 30(21): 4202. • IF 4.6

Priego-Cubero S., Knoch E., Wang Z., Alseekh S., Braun K.H., Chapman P., Fernie A.R., Liu C., Becker C. (2025)

Subfunctionalization and epigenetic regulation of a biosynthetic gene cluster in Solanaceae.

Proceedings of the National Academy of Sciences. 122(8): e2420164122. • IF 9.4

Qureshi M.K., Rai A., Rasul F., Staykov N., Sujeeth N., Gechev T. (2025)

Molecular priming by a biostimulant derived from Ascophyllum nodosum mitigates drought stress in vegetable crops.

In: Plant Stress Physiology Days Scientific Booklet, Eds.: Seckin Dinler B., Gul V., Sefaoglu F. Iksad Publications, ISBN: 978-625-378-277-1.

Rabas A., Colo A., Kaberi K., Ivanov D.A., Bernards M.A. (2025)

The properties of ginsenosides in ginseng garden soil: accumulation, persistence and behaviour.

Plant Soil. 511(1-2): 855-866. • IF 4.1

Rojo A.I., Buttari B., Cadenas S., Carlos A.R., Cuadrado A., Falcão A.S., López M.G., Georgiev M.I., Grochot-Przeczek A., Gumeni S., Jimenez-Villegas J., Horbanczuk J.O., Konu O., Lastres-Becker I., Levonen A.L., Maksimova V., Michaeloudes C., Mihaylova L.V., Mickael M.E., Milisav I., Miova B., Rada P., Santos M., Seabra M.C., Strac D.S., Tenreiro S., Trougakos I.P., Dinkova-Kostova A.T. (2025)

Model organisms for investigating the functional involvement of NRF2 in non-communicable diseases.

Redox Biology. 79: 103464. • IF 11.9

Ruseva M., Kazashka V., Kazashka T., Kantardzhieva E., Gechev T., Ivanova A., Tabakova-Komsalova V. (2025)

The role of demographic factors in careera motivation in a regional crop production cluster.

KNOWLEDGE – International Journal. 72(1): 125 –130.

Sacharowski S.P., Kubala S., Cwiek P., Steciuk J., Gratkowska-Zmuda D., Oksinska P., Bucior E., Rolicka A.T., Ciesla M., Nowicka K., Alseekh S., Tohge T., Giavalisco P, Zugaj D.L., Stolze S.C., Harzen A., Franzen R., Huettel B., Grzesiuk E., Hajirezaei M.R., Nakagami H., Koncz C., Fernie A.R., Sarnowski T.J. (2025)

BAF60/SWP73 subunits define subclasses of SWI/SNF chromatin remodelling complexes in Arabidopsis.

New Phytologist. DOI: 10.1111/nph.70182. • IF 8.3

Savova M.S., Todorova M.N., Binev B.K., Georgiev M.I., Mihaylova L.V. (2025)

Curcumin enhances the anti-obesogenic activity of orlistat through SKN-1/NRF2-dependent regulation of nutrient metabolism in Caenorhabditis elegans.

International Journal of Obesity. 49(3): 516 –526. • IF 3.8

Shahid S., Ambrin., Bibi B., Sharipova V., Asad F., Gechev T. (2025)

Bioprotective role of Cladosporium tenuissimum counteracting heavy metal (Cr) stress in Triticum aestivum L

Frontiers in Microbiology. 16: 1685402. • IF 5.9

Staykov N., Kanojia A., Lyall R., Ivanova V., Alseekh S., Petrov V., Gechev T. (2025)

Sustainable agriculture through seaweed biostimulants: A two-year study demonstrates yield enhancement in pepper and eggplant.

Frontiers in Plant Science. 16: 1655340. • IF 5.9

Steimker J., Wendenburg R., Klemmer A., Rosaria M., Fernie A.R., Alseekh S., Tripodi P. (2025)

Genome-wide association analysis and linkage mapping decipher the genetic control of primary metabolites and quality traits in Capsicum

The Plant Journal. 122(6): e70300. • IF 5.7

Stoykova I.D., Koycheva I.K., Binev B.K., Mihaylova L.V., Georgiev M.I. (2025)

Molecular approaches to prevent UV-induced premature skin aging: Focus on phytochemicals as photo-protectants.

Phytochemistry Reviews. 24(1): 119 –150. • IF 7.6

Todorova V., Todorova M.N., Savova M.S., Ivanov K., Georgiev M.I., Ivanova S. (2025)

Maral root extract and its main constituent 20-Hydroxyecdysone enhance stress resilience in Caenorhabditis elegans.

International Journal of Molecular Sciences. 26(8): 3739. • IF 5.6

Takova K., Tonova V., Minkov I., Mardanova E.S., Ravin N.V., Kotsev S., Pishmisheva M., Zahmanova G. (2025)

Plant-based antigen production strategy for SARS-CoV-2 nucleoprotein and RBD and its application for detection of antibody responses in COVID-19 patients

Applied Sciences. 15(2): 786. • IF 2.5

Tiozon R.N., Pasion-Uy E., Alseekh S., Sartagoda K.J.D., Gempesaw S., Tolentino J.H.G., Fernie A.R., Sreenivasulu N. (2025)

Lipidomics-based association study reveals genomic signatures of anti-cancer qualities of pigmented rice sprouts.

Frontiers in Plant Science. 16: 1533442. • IF 5.9

Tringovska I., Stoeva V., Todorova V., Grozeva S., Jaganathan D., Nankar A. (2025)

Elemental profiling of Balkan pepper (Capsicum annuum L.) core collection.

Scientia Horticulturae. 352: 114452. • IF 4.2

Urbancsok J., Donev E.N., Derba-Maceluch M., Sivan P., Barbut F.R., Mitra M., Yassin Z., Cermanová K., Šimura J., Karady M., Scheepers G., Mellerowicz E.J. (2025)

Wood-specific modification of glucuronoxylan can enhance growth in Populus.

Journal of Experimental Botany. DOI: 10.1093/jxb/eraf364. • IF 6.5

Vatov E., Gechev T. (2025)

Delay in flowering time in Arabidopsis thaliana Col-0 under water deficit and in the ddc triple methylation knockout mutant Is correlated with shared overexpression of BBX16 and BBX17.

International Journal of Molecular Sciences. 26(17): 8360. • IF 5.6

Vatov E., Gechev T. (2025)

Recent evidence for transgenerational adaptation resulting from stress induced changes in the cytosine methylation landscape of plants.

Plant Stress. 16: 100812. • IF 8.1

Wang S., Zhang X., Gong D.H., Huang Q.Q., Kandegama W., Georgiev M.I., Gao Y.Y., Liao P., Hao G.F. (2025)

Sophisticated crosstalk of tryptophan-derived metabolites in plant stress responses.

Plant Communications. 6(9): 101425. • IF 13.7

Yuan Y., Iannetta A.A., Kim M., Sadecki P.W., Arend M., Tsichla A., Ruiz-Sola M.A., Kepesidis G., Falconet D., Thevenon E., Tardif M., Brugière S., Couté Y., Kleman J.P., Sizova I., Schilling M., Jouhet J., Hegemann P., Li-Beisson Y., Nikoloski Z., Bastien O., Hicks L.M., Petroutsos D. (2025)

Phototropin connects blue light perception to starch metabolism in green algae.

Nature Communications. 16(1): 2545. • IF 14.7

Zahmanova G., Takova K., Tonova V., Minkov I., Barbolov M., Nedeva N., Vankova D., Ivanova D., Kiselova-Kaneva Y., Lukov G.L. (2025)

How can plant-derived natural products and plant biotechnology help against emerging viruses?

International Journal of Molecular Sciences. 26(15): 7046. • IF 5.6

Zareen S., Ali A., Park J., Kang S.M., Lee I.J., Pardo J.M., Yun D.J., Xu Z.Y. (2025)

HOS15 impacts DIL9 protein stability during drought stress in Arabidopsis.

New Phytolologist. DOI: 10.1111/nph.20398. • IF 8.3

Zhang J., Alseekh S., Fernie A.R., Qian D., Huang L. (2025)

Chemical characterization of lipids provides new Insights into goji berry metabolism.

ACS Food Science and Technology. 5(2): 761 – 769. • IF 2.6

2024

Ali A., Zareen S., Park J., Khan HA., Lim CJ., Bader ZE., Hussain S., Chung WS., Gechev T., Pardo JM., Yun DJ. (2024)

ABI2 promotes flowering by inhibiting OST1/ABI5-dependent FLC activation in Arabidopsis.

Journal of Experimental Botany. 75(8): 2481 –2493. • IF 5.7

Afzal A., Khan M.A., NadeemTahir M.H., Khan Z., Hassan Z., Gechev T., Ali Z., Faisal M. (2024)

Antimicrobial effect of green synthesized TiO2 nanoparticles against Cercospora canesces growth in mung bean.

Journal of Agriculture and Biology. 2(2): 3007-1755.

Badoni S., Pasion-Uy A., Kor S., Kim S.R., Tiozon R.N., Misra G., Buenafe R.Q., Labarga L.M., Ramos-Castrosanto A.R., Pratap V., Slamet-Loedin I., Steimker J.V., Alseekh S., Fernie A.R., Kohli A., Khush G.S., Sreenivasulu N. (2024)

Multiomics of a rice population identifies genes and genomic regions that bestow low glycemic index and high protein content.

Proceedings of the National Academy of Sciences USA. 121(36): e2410598121. • IF 9.4

Bortlik J., Lühle J., Alseekh S., Weiste C., Fernie A.R., Dröge-Laser W., Börnke F. (2024)

DOMAIN OF UNKNOWN FUNCTION581-9 negatively regulates SnRK1 kinase activity.

Plant Physiology. 194(3): 1853-1869. • IF 6.5

Domer A., Jasinska W., Rosental L., Shochat E., Alseekh S., Fernie A.R., Brotman Y., Ovadia O. (2024)

Comparative analysis of the plasma metabolome of migrating passerines: novel insights into stopover metabolism.

Journal of Avian Biology. 2024: e03331. • IF 1.5

Dorrell R.G, Zhang Y., Liang Y., Gueguen N., Nonoyama T., Croteau D. Penot M., Adiba S., Bailleul B., Gros V., Pierella Karlusich J.J, Zweig N., Fernie A.R., Jouhet J., Maréchal E., Bowler C. (2024)

Complementary environmental analysis and functional characterization of lower glycolysis-gluconeogenesis in the diatom plastid.

The Plant Cell. 36(9): 3584 –3610. • IF 10.0

Dziubek D., Poeker L., Siemiątkowska B., Graf A., Marino G., Alseekh S., Arrivault S., Fernie A.R., Armbruster U., Geigenberger P. (2024)

NTRC and thioredoxins m1/m2 underpin the light acclimation of plants on proteome and metabolome levels.

Plant Physiology. 194(2): 982-1005. • IF 6.6

Ebert A., Alseekh S., D’Andrea L., Roessner U., Bock R., Kopka J. (2024)

Detailed profiling of 17-Hydroxygeranyllinalool diterpene glycosides from Nicotiana species reveals complex reaction networks of conjugation isomers.

Metabolites. 14(10): 562. • IF 3.4

Farag M.A., Baky M.H., Kühnhold H., Kriege E.A., Kunzmann A., Alseekh S., Al-Hammady M.A., Ezz S., Fernie A.R., Westphal H., Stuhr M. (2024)

Effects of thermal and UV stress on the polar and non-polar metabolome of photosymbiotic jellyfish and sea anemones.

Marine Pollution Bulletin. 208: 116983. • IF 5.3

Fontanet-Manzaneque J.B., Laibach N., Herrero-García .I, Coleto-Alcudia V., Blasco-Escámez D., Zhang C., Orduña L., Alseekh S., Miller S., Bjarnholt N., Fernie A.R., Matus J.T., Caño-Delgado AI. (2024)

Untargeted mutagenesis of brassinosteroid receptor SbBRI1 confers drought tolerance by altering phenylpropanoid metabolism in Sorghum bicolor.

Plant Biotechnology Journal. 22(12): 3227-3535. • IF 11.2

Gechev T., Kazakov P., Ivanova A., Ivanova T., Mircheva M., Kolev V., Ganeva D., Kosmalova T.V., Ruseva M., Kantardjiev E., Kazashka V. (2024)

Establishment and development of the center of plant systems biology and biotechnology in Plovdiv, Bulgaria.

Open Research Europe. 3:140.

Gupta S., Petrov V., Garg V., Mueller-Roeber B., Fernie A.R., Nikoloski Z., Gechev T. (2024)

The genome of Haberlea rhodopensis provides insights into the mechanisms for tolerance to multiple extreme environments.

Cellular and Molecular Life Sciences. 81(1): 117. • IF 8

Huang X., He Y., Zhang K., Shi Y., Zhao H., Lai D., Lin H., Wang X., Yang Z., Xiao Y., Li W., Ouyang Y., Woo S.H., Quinet M., Georgiev M.I., Fernie A.R., Liu X., Zhou M. (2024)

Evolution and domestication of a novel biosynthetic gene cluster contributing to the flavonoid metabolism and high-altitude adaptability of plants in the Fagopyrum genus.

Advanced Science. 11(43): e2403603. • IF 14.1

Jha R., Zhang K., He Y., Mendler-Drienyovszki N., Magyar-Tábori K., Quinet M., Germ M, Kreft I., Meglič V., Ikeda K., Chapman M.A., Janovská D., Podolska G., Woo S.-H., Bruno S., Georgiev M.I., Chrungoo N., Betekhtin A., Zhou M. (2024)

Global nutritional challenges and opportunities: Buckwheat, a potential bridge between nutrient deficiency and food security.

Trends in Food Science and Technology. 145: 104365 • IF 15.4

Kanojia A., Lyall R., Sujeeth N., Alseekh S., Martínez-Rivas F., Fernie A.R., Gechev T., Petrov V. (2024)

Physiological and molecular insights into the effect of a seaweed biostimulant on enhancing fruit yield and drought tolerance in tomato.

Plant Stress. 14: 100692. • IF 6.8

Kazakov P., Alseekh S., Ivanova V., Gechev T. (2024)

Biostimulant-based molecular priming improves crop quality and enhances yield of raspberry and strawberry fruits.

Metabolites. 14(11): 594. • IF 3.4

Kazashka V., Ivanova A., Mircheva-Topalova M., Ruseva M., Gechev T. (2024)

Challenges and opportunities for the eu center of excellence in plant systems biology and biotechnology in plovdiv, bulgaria.

Proceedings of CBU in Economics and Business. 4: 7-14.

Kazashka V., Kazashka T., Ivanova A., Ruseva M. (2024)

Някои аспекти от подбора и назначаването на служители в Центъра по растителна системна биология и биотехнология (ЦРСББ) – Пловдив. Сборник от ХІ Международна научна конференция “Съвременният свят – постижения, рискове, иновации”, 23-25 април 2024, Русе.

Kozuharova E., Pasdaran A., Hamedi A., Batovska D., Georgiev M.I., Marchev A., Attard E., Gibernau M. (2024)

Bioactive compounds and biological activities of Arum L.. In: Murthy H.N., Paek K.Y., Park SY. (Eds.)

Bioactive compounds in the storage organs of plants. Reference series in phytochemistry. Springer. Cham. pp. 105-138. (ISBN: 978-3-031-44746-4)

Lai D., Zhang K., He Y., Fan Y., Li W., Shi Y., Gao Y., Huang X., He J., Zhao H., Lu X., Xiao Y., Cheng J., Ruan J., Georgiev M.I., Fernie A., Zhou M. (2024)

Multi-omics identification of a key glycosyl hydrolase gene FtGH1 involved in rutin hydrolysis in Tartary buckwheat (Fagopyrum tataricum).

Plant Biotechnology Journal. (22)5: 1206-1223. • IF 10.1

López-Tubau J.M., Laibach N., Burciaga-Monge A., Alseekh S., Deng C., Fernie A.R., Altabella T., Ferrer A. (2024)

Differential impact of impaired steryl ester biosynthesis on the metabolome of tomato fruits and seeds.

177(1): e70022. Physiologia Plantarum. • IF 5.4

Liu F., Fernie A.R., Zhang Y. (2024)

Plant gene co-expression defines the biosynthetic pathway of neuroactive alkaloids.

Molecular Plant. 17(3):372-374. • IF 17.1

Mardanova E.S., Vasyagin E.A., Kotova K.G., Zahmanova G., Ravin N.V. (2024)

Plant-produced chimeric Hepatitis E virus-like particles as carriers for antigen presentation.

Viruses. 16(7): 1093. • IF 4.700

Marchev A.S., Stoykova I.D., Georgiev M.I. (2024)

Large-scale production of specialized metabolites in vitro cultures. In: Loyola-Vargas V., Ochoa-Alejo N. (Eds.)

Plant cell culture protocols. Methods in molecular biology. vol 2827. Humana, New York, NY, USA. pp. 303-322. ISBN: 978-1-0716-3954-2.

Naake T., Zhu F., Alseekh S., Scossa .F., Perez de Souza L., Borghi M., Brotman Y., Mori T., Nakabayashi R., Tohge T., Fernie A.R. (2024)

Genome-wide association studies identify loci controlling specialized seed metabolites in Arabidopsis.

Plant Physiology. 194(3): 1705-1721. • IF 6.5

Qu Y., Fernie A.R., Liu J., Yan J. (2024)

Doubled haploid technology and synthetic apomixis: recent advances and applications in future crop breeding.

Molecular Plant. 17(7): 1005-1018. • IF 17.1

Stavrakeva K., Metodieva K., Benina M., Bivolarska A., Dimov I., Choneva M., Kokova V., Alseekh S., Ivanova V., Vatov E., Gechev T., Mladenova T., Mladenov R., Todorov K., Stoyanov P., Gyuzeleva D., Popova M., Apostolova E. (2024)

Metabolic composition of methanolic extract of the Balkan endemic species Micromeria frivaldszkyana (Degen) Velen and Its Anti-Inflammatory Effect on Male Wistar Rats.

International Journal of Molecular Sciences. 25(10): 5396. • IF 5.6

Steimker J., Tripodi P., Wendenburg R., Tringovska I., Nankar A., Stoeva V., Pasev G., Klemmer A., Todorova V., Bulut M., Tikunov Y., Bovy A., Gechev T., Kostova D., Fernie A.R., Alseekh S. (2024)

The genetic architecture of the pepper metabolome and the biosynthesis of its signature capsianoside metabolites.

Current Biology. 34(18): 4209-4223.e3. • IF 8.1

Stoykova I.D, Koycheva I.K, Binev B.K, Mihaylova L.V., Benina M.A, Alipieva K., Georgiev M.I. (2024)

Myconoside and calceolarioside E restrain UV-Induced skin photoaging by activating NRF2-mediated defense mechanisms.

International Journal of Molecular Sciences. 25(4): 2441. • IF 4.9

Stoykova I.D, Koycheva I.K., Binev B.K., Mihaylova L.V., Georgiev M.I. (2024)

Molecular approaches to prevent UV-induced premature skin aging: Focus on phytochemicals as photo-protectants.

Phytochemistry Reviews. 119 –150. • IF 7.4

Timm S., Klaas N., Niemann J., Jahnke K., Alseekh S., Zhang Y., Souza P.L., Hou L.Y., Cosse M., Selinski J., Geigenberger P., Daloso D.M., Fernie A.R., Hagemann M. (2024)

Thioredoxins o1 and h2 jointly adjust mitochondrial dihydrolipoamide dehydrogenase-dependent pathways towards changing environments.

Plant, Cell & Environment. 47(7): 2542-2560. • IF 7.947

Todorova. V., Nankar A.N., Yankova V., Tringovska I., Markova D. (2024)

Assessment of Balkan Pepper (Capsicum annuum L.) accessions for agronomic, fruit quality, and pest resistance traits.

Horticulturae. 10(4): 389. • IF 3.1

Todorova M.N., Savova M.S., Mihaylova L.V., Georgiev M.I. (2024)

Icariin improves stress resistance and extends lifespan in Caenorhabditis elegans through hsf-1 and daf-2-driven hormesis.

International Journal of Molecular Sciences. 25(1): 352. • IF 4.9

Todorova M.N., Savova, M.S., Mihaylova L.V., Georgiev, M.I. (2024)

Nurturing longevity through natural compounds: Where do we stand, and where do we go?

Food Frontiers. 5(2): 267-310. • IF 6.9

Todorova M.N., Savova M.S., Mihaylova L.V., Georgiev M.I. (2024)

Punica granatum L. leaf extract enhances stress tolerance and promotes healthy longevity through HLH-30/TFEB, DAF16/FOXO, and SKN1/NRF2 crosstalk in Caenorhabditis elegans.

Phytomedicine. 134: 155971. • IF 8.3

Tiozon R.J.N., Alseekh S, Fernie A.R., Bonto A.P., Yu J, Buenafe R.J.Q., Sreenivasulu N. (2024)

Comprehensive lipidomic insights of differentially accumulating lipids in large pigmented rice sprout collection and the changes in the starch composition upon germination.

Food Chemistry. 460(Pt 2): 140677. • IF 8.5

Wijesingha Ahchige M., Fisher J., Sokolowska E., Lyall R., Illing N., Skirycz A., Zamir D., Alseekh S., Fernie A.R. (2024)

The variegated canalized-1 tomato mutant is linked to photosystem assembly.

Computational and Structural Biotechnology Journal. 23: 3967-3988. • IF 4.5

Yaneva T.G., Wiczkowski W., Marchev A.S., Iserliyska D., Georgiev M.I., Tomlekova N.B. (2024)

Evaluation of polyphenols synthesized in mature seeds of common bean (Phaseolus vulgaris L.) advanced mutant lines.

International Journal of Molecular Science. 25(11): 5638. • IF 4.9

Yang Z., Tan D., Chen W., Hu J., Huang R., Wu X., Georgiev M.I., Bai W., Tian L. (2024)

Fermentation characteristics and prebiotic potential of enzymatically synthesized butyryl-fructooligosaccharides.

Carbohydrate Polymers. 324: 121486. • IF 12.7

Yu Y., Alseekh S., Zhu Z., Zhou K., Fernie A.R. (2024)

Multiomics and biotechnologies for understanding and influencing cadmium accumulation and stress response in plants.

Plant Biotechnolgy Journal. 22: 2641-2659. • IF 13.8

Yu Y., Fotopoulos V., Zhou K., Fernie A.R. (2024)

The role of gasotransmitter hydrogen sulfide in plant cadmium stress responses.

Trends in Plant Science. S1360-1385(24): 00232-2. • IF 17.3

Zahmanova G., Takova K., Lukov G.L., Andonov A. (2024)

Hepatitis E virus in domestic ruminants and virus excretion in milk-A potential source of zoonotic HEV infection.

Viruses. 16(5): 684. • IF 4.700

Zhu F., Ahchige M.W., Wen W., Cheng Y., Alseekh S., Fernie A.R. (2024)

The natural variance of Arabidopsis secondary metabolism on extended darkness

Scientific Data. 11(1): 841. • IF 9.8

2023

Aarabi F., Ghigi A., Ahchige M.W., Bulut M., Geigenberger P., Neuhaus H.E., Sampathkumar A., Alseekh S., Fernie A.R. (2023)

Genome-wide association study unveils ascorbate regulation by PAS/LOV PROTEIN during high light acclimation.

Plant Physiology. 193(3): 2037-2054. • IF 8.005

Alamillo J.M, López C.M, Martínez Rivas F.J, Torralbo F., Bulut M., Alseekh S. (2023)

Clustered regularly interspaced short palindromic repeats/CRISPR-associated protein and hairy roots: a perfect match for gene functional analysis and crop improvement.

Current Opinion in Plant Biology. 79: 102876. • IF 9.396

Ali A., Petrov V., Yun DJ., Gechev T. (2023)

Revisiting plant salt tolerance: Novel components of the SOS-pathway.

Trends in Plant Science. 28: 1060 –1069. • IF 22.012

Ali K., Georgiev M.I. (2023)

Editorial: Omics and its integration: a systems biology approach to understanding plant physiology.

Frontiers in Plant Science. 14: 1324901. • IF 4.1

Alseekh S., Karakas E., Zhu F., Wijesingha Ahchige M., Fernie A.R. (2023)

Plant biochemical genetics in the multiomics era.

Journal of Experimental Botany. 74(15): 4293 –4307. • IF 7.298

Alseekh S., Fernie A.R. (2023)

Expanding our coverage: Strategies to detect a greater range of metabolites.

Current Opinion in Plant Biology. 73: 102335. • IF 9.396

Amirova K., Dimitrova P., Leseva M., Koycheva I.K, Dinkova-Kostova Albena., Georgiev M.I. (2023)

The triterpenoid Nrf2 Activator, CDDO-Me, decreases neutrophil senescence in a murine model of joint damage.

International Journal of Molecular Sciences. 24(10): 8775. • IF 4.9

Arend M., Yuan Y., Ruiz-Sola M.Á., Omranian N., Nikoloski Z., Petroutsos D. (2023)

Widening the landscape of transcriptional regulation of green algal photoprotection.

Nature Communications. 14(1): 2687. • IF 17.694

Balparda M., Schmitz J., Duemmel M., Wuthenow I.C., Schmidt M., Alseekh S., Fernie A.R., Lercher M.J., Maurino V.G. (2023)

Viridiplantae-specific GLXI and GLXII isoforms co-evolved and detoxify glucosone in planta.

Plant Physiology. 191(2): 1214-1233. • IF 8.005

Bellucci E., Benazzo A., Xu C., Bitocchi E., Rodriguez M., Alseekh S., Di Vittori V., Gioia T., Neumann K., Cortinovis G., Frascarelli G., Murube E., Trucchi E., Nanni L., Ariani A., Logozzo G., Shin JH., Liu C., Jiang .L, Ferreira J.J., Campa A., Attene G., Morrell P.L., Bertorelle G., Graner A., Gepts P., Fernie A.R., Jackson S.A., Papa R. (2023)

Selection and adaptive introgression guided the complex evolutionary history of the European common bean.

Nature Communications. 14(1): 1908. • IF 17.694

Boneva B., Marchev A., Amirova K., Ganova P., Georgiev M.I., Tchorbanov A., Mihaylova N. (2023)

Crocus sativus extract as a biological agent for disease-modifying therapy of collagenase-induced mouse model of osteoarthritis.

Life. 13(4): 894. • IF 3.2

Bulut M., Alseekh S., Fernie A.R. (2023)

Natural variation of respiration-related traits in plants.

Plant Physiology. 191(4): 2120-2132. • IF 8.005

Bulut M., Nunes-Nesi A., Fernie A.R., Alseekh S. (2023)

Characterization of PetM cytochrome b6f subunit 7 domain-containing protein in tomato.

Horticulture Research. 10(12): uhad224. • IF 7.291

Bulut M., Wendenburg R., Bitocchi E., Bellucci E., Kroc M., Gioia T., Susek K., Papa R., Fernie A.R., Alseekh S. (2023)

A comprehensive metabolomics and lipidomics atlas for the legumes common bean, chickpea, lentil and lupin.

The Plant Journal. 116(4): 1152-1171. • IF 7.091

Chen C., Zhang K., Liu F., Wang X., Yao Y., Niu X., He Y., Hong J., Liu F., Gao Q., Zhang Y., Li Y., Wang M., Lin J., Fan Y., Ren K., Shen L., Gao B., Ren X., Yang W., Georgiev M.I., Zhang X., Zhou M. (2023)

Resequencing of global Lotus corniculatusaccessions reveals population distributionand genetic loci, associated with cyanogenic glycosides accumulation and growth traits.

BMC Biology. 21: 176. • IF 4.4

Chen Y., Wang Y., Liang X., Zhang Y., Fernie A.R. (2023)

Mass spectrometric exploration of phytohormone profiles and signaling networks.

Trends in Plant Science. 28(4): 399-414. • IF 22.012

Córdoba S.C., Tong H., Burgos A., Zhu F., Alseekh S., Fernie A.R., Nikoloski Z. (2023)

Identification of gene function based on models capturing natural variability of Arabidopsis thaliana lipid metabolism.

Nature Communications. 4(1): 4897. • IF 17.694

Dahmani I., Qin K., Zhang Y., Fernie A.R. (2023)

The Formation and Function of Plant Metabolons.

Plant Journal. 114(5): 1080-1092. • IF 7.091

Dong Y., Gupta S., Wargent J., Putterill J., Macknight R., Gechev T., Mueller-Roeber B., Dijkwel P. (2023)

Comparative transcriptomics of multi-stress responses in Pachycladon cheesemanii and Arabidopsis thaliana.

International Journal of Molecular Sciences. 24(14): 11323. • IF 6.208

Fan R., Zhu C., Qiu D., Mao G., Mueller-Roeber B., Zeng J. (2023)

Integrated transcriptomic and metabolomic analyses reveal key genes controlling flavonoid biosynthesis in citrus grandis ‘Tomentosa’ fruits.

Plant Physiology and Biochemistry. 196: 210-221. • IF 5.437

Fernie A.R., Alseekh S. (2023)

Phylogenomic discovery of deleterious mutants completes the potato breeding revolution.

Molecular Plant. 16(7): 1103-1105. • IF 27.5

Gechev T., Kazakov P., Ivanova A., Ivanova T., Mircheva M., Kolev V., Ganeva D., Kosmalova T.V., Ruseva M., Kantardjiev E., Kazashka V. (2023)

Establishment and development of the center of plant systems biology and biotechnology in Plovdiv, Bulgaria.

Open Research Europe. 3:140.

Giese J., Eirich J., Walther D., Zhang Y., Lassowskat I., Fernie A.R., Elsässer M., Maurino V.G., Schwarzländer M., Finkemeier I. (2023)

The interplay of post-translational protein modifications in Arabidopsis leaves during photosynthesis induction.

The Plant Journal. 116(4): 1172-1193. • IF 6.2

Gyuzeleva D., Benina M., Ivanova V., Vatov E., Alseekh S., Mladenova T., Mladenov R., Todorov K., Bivolarska A., Stoyanov P. (2023)

Metabolome profiling of Marrubium peregrinum L. and Marrubium friwaldskyanum boiss reveals their potential as sources of plant-based pharmaceuticals.

International Journal of Molecular Sciences. (24)23: 17035. • IF 6.208

Hayashi K., Alseekh S., Fernie A.R. (2023)

Genetic and epigenetic control of the plant metabolome.

Proteomics. 13: e2200104. • IF 5.911

He Y., Zhang K., Li S., Lu X., Zhao H., Guan C., Huang X., Shi Y., Kang Z., Fan Y., Li W., Chen C., Li G., Long O., Chen Y., Hu M., Cheng J., Xu B., Chapman M.A., Georgiev M.I., Fernie A.R., Zhou M. (2023)

Multiomics analysis reveals the molecular mechanisms underlying virulence in Rhizoctonia and JA-mediated resistance in Tartary buckwheat(Fagopyrum tataricum).

The Plant Cell. 35(8): 2773-2798. • IF 10.0

Huda, M. N., Li, X., Jahan, T., He, Y., Guan, C., Zhang K., Gao A., Georgiev M.I., Zhou M. (2023)

Acceleration of the genetic gain for nutraceutical improvement of adlay (Coix L.) through genomic approaches: current status and future prospects.

Food Reviews International. 39(8): 5377-5401. • IF 6.043

Ivanova T., Marchev A., Chervenkov M., Bosseva Y., Georgiev M.I., Kozuharova E., Dimitrova D. (2023)

Catching the green-Diversity of ruderal spring plants traditionally consumed in Bulgaria and their potential benefit for human health.

Diversity. 15(3): 435. • IF 2.1

Jia ZC., Das D., Zhang Y., Fernie A.R., Liu Y.G., Chen M., Zhang J. (2023)

Plant serine/arginine-rich proteins: versatile players in RNA processing.

Planta. 257(6): 109. • IF 4.54

John S., Apelt F., Kumar A., Acosta I.F, Bents D., Annunziata M.G., Fichtner F., Gutjahr C., Mueller-Roeber B., Olas J.J. (2023)

Transcription factor HSFA7b controls thermomemory at the shoot apical meristem by regulating ethylene biosynthesis and signaling in Arabidopsis.

Plant Communications. S2590-3462(23): 00289-4. • IF 10.5

Julca I., Mutwil-Anderwald D., Manoj V., Khan Z., Lai S.K., Yang L.K., Beh IT., Dziekan J., Lim Y.P., Lim S.K., Low Y.W, Lam Y.I, Tjia S., Mu Y., Tan Q.W., Nuc P., Choo L.M., Khew G., Shining L., Kam A., Tam J.P., Bozdech Z., Schmidt M., Usadel B., Kanagasundaram Y.S, Alseekh S., Fernie A., Li H.Y., Mutwil M. (2023)

Genomic, transcriptomic, and metabolomic analysis of Oldenlandia corymbosa reveals the biosynthesis and mode of action of anti-cancer metabolites.

Journal of Integrative Plant Biology. 65(6): 1442-1466. • IF 9.106

Kanojia A., Xu.X., Dijkwel P. (2023)

Chapter 6 – The plant hormone ethylene.

Academic Press. Pages 73-87.

Karakas E., Ferrante P., Schafleitner R., Giuliano G., Fernie A.R., Alseekh S. (2023)

Plant Sample Collection and Shipment for Multi-omic Analyses and Phytosanitary Evaluation. Current Protocols. (12): e952.

Kazakov P., Atanasov D., Gechev T. (2023)

The teaming initiative: Establishing of new european centers of excellence in plant biology and medicine.

Austin Journal of Plant Biology. 9(2): 1040. • IF 1.50

Kazshka V., Ruseva M. (2023)

Investigation of the personnel motivation for career development in a cluster for crop production. Proceedings of 2 International Conference of Plant System Biology and Biotechnology 25- 27 September 2023, Plovdiv, изд. Жанет 45, ISBN 978-619-186-848-3.

Koycheva I.K., Marchev A.S., Stoykova I.D., Georgiev M.I. (2023)

Natural alternatives targeting psoriasis pathology and key signaling pathways: a focus on phytochemicals.

Phytochemistry Reviews. (in press). DOI: 10.1007/s11101-023-09886-9 • IF 7.3

Khan N.Z., Ali A., Ali W., Aasim M., Khan T., Khan Z., Munir I. (2023)

Heterologous expression of bacterial dehydrin gene in Arabidopsis thaliana promotes abiotic stress tolerance.

Physiology and Molecular Biology of Plants. DOI: https://doi.org/10.1007/s12298-023-01358-w. • IF 3.90

Li X., Tieman D., Alseekh S., Fernie A.R., Klee H.J. (2023)

Natural variations in the Sl-AKR9 aldo/keto reductase gene impact fruit flavor volatile and sugar contents.

The Plant Journal. 115(4): 1134-1150. • IF 7.091

López C.M., Alseekh S., Torralbo F., Martínez Rivas F.J., Fernie A.R., Amil-Ruiz F., Alamillo J.M. (2023)

Transcriptomic and metabolomic analysis reveals that symbiotic nitrogen fixation enhances drought resistance in common bean.

Journal of Experimental Botany. 74(10): 3203 –3219. • IF 7.298

Machens F., Ran G., Ruehmkorff C., Meyer Auf der Heyde J., Mueller-Roeber B., Hochrein L. (2023)

PhiReX 2.0: A Programmable and Red Light-Regulated CRISPR-dCas9 System for the Activation of Endogenous Genes in Saccharomyces cerevisiae.

ACS Synthetic Biology. 12(4): 1046-1057. • IF 5.249

Mardanova E.S., Kotlyarov R.Y., Stuchinskaya M.D., Nikolaeva L.I.,Zahmanova G., Ravin N.V. (2023)

High-yield production of chimeric Hepatitis E virus-like particles bearing the M2e influenza epitope and receptor binding domain of SARS-CoV-2 in plants using viral vectors.

International Journal of Molecular Sciences. 23(24): 15684. • IF 6.208

Martínez-Rivas F.J., Blanco-Portales R., Serratosa M.P., Ric-Varas P., Guerrero-Sánchez V., Medina-Puche L., Moyano L., Mercado J.A., Alseekh S., Caballero J.L., Fernie A.R., Muñoz-Blanco J., Molina-Hidalgo FJ. (2023)

FaMYB123 interacts with FabHLH3 to regulate the late steps of anthocyanin and flavonol biosynthesis during ripening.

The Plant Journal. 114(3): 683-698. • IF 7.091

Mladenova S.G., Todorova M.N., Savova M.S., Mihaylova L.V., Georgiev M.I. (2023)

Maackiain mimics caloric restriction through aak-2-mediated lipid reduction in Caenorhabditis elegans.

International Journal of Molecular Sciences. 24(24): 17442. • IF 4.9

Natale R., Coppola M., D’Agostino N., Zhang Y., Fernie A.R., Castaldi V., Rao R. (2023)

In silico and in vitro approaches allow the identification of the Prosystemin molecular network.

Computational and Structural Biotechnology Journal. 21: 212-223. • IF 7.271

Perez de Souza L, Fernie A.R. (2023)

Computational methods for processing and interpreting mass spectrometry-based metabolomics.

Computational and Structural Biotechnology Journal. DOI: 10.1042/EBC20230019. • IF 7.271

Petrov V., Gechev T. (2023)

ROS and abiotic stress in plants 2.0.

International Journal of Molecular Sciences. 24(15): 11917. • IF 6.208

Poplawski P., Alseekh S., Jankowska U., Skupien-Rabian B., Iwanicka-Nowicka R., Kossowska H., Fogtman A., Rybicka B., Bogusławska J., Adamiok-Ostrowska A., Hanusek K., Hanusek J., Koblowska M., Fernie A.R., Piekiełko-Witkowska A. (2023)

Coordinated reprogramming of renal cancer transcriptome, metabolome and secretome associates with immune tumor infiltration.

Cancer Cell International. 23(1): 2. • IF 6.07

Qiu H., Zhang X., Zhang Y., Jiang X., Ren Y., Gao D., Zhu X., Usadel B., Fernie A.R., Wen W. (2023)

Depicting the genetic and metabolic panorama of chemical diversity in the tea plant.

Plant Biotechnology Journal. 22(4): 1001-1016. • IF 13.263

Salem M.A., Aborehab N.M., Abdelhafez M.M., Ismail S.H., Maurice N.W., Azzam M.A., Alseekh S., Fernie A.R., Salama M.M., Ezzat S.M. (2023)

Anti-obesity effect of a tea mixture nano-formulation on rats occurs via the upregulation of AMP-activated protein kinase/sirtuin-1/glucose transporter type 4 and peroxisome proliferator-activated receptor gamma pathways

Metabolites. 13(7): 871. • IF 3.4

Salem M.A., El-Shiekh R.A, Aborehab N.M., Al-Karmalawy A.A., Ezzat S.M., Alseekh S., Fernie A.R. (2023)

Metabolomics driven analysis of Nigella sativa seeds identifies the impact of roasting on the chemical composition and immunomodulatory activity.

Food Chemistry. 398: 133906 • IF 8.5

Sarnowska E., Kubala S., Cwiek P., Sacharowski S., Oksinska P., Steciuk J., Zaborowska M., Szurmak J.M., Dubianski R., Maassen A., Stachowiak M., Huettel B., Ciesla M., Nowicka K., Rolicka A.T., Alseekh S., Bucior E., Franzen R., Skoneczna A., Domagalska M.A., Amar S., Hajirezaei M.R., Siedlecki J.A., Fernie A.R., Davis S.J., Sarnowski T.J. (2023)

A non-canonical function of Arabidopsis ERECTA proteins and a role of the SWI3B subunit of the SWI/SNF chromatin remodeling complex in gibberellin signaling.

The Plant Journal. 115(3): 788-802. • IF 7.091

Savova M.S., Mihaylova L.V., Tews D., Wabitsch M., Georgiev M.I. (2023)

Targeting PI3K/akt signaling pathway in obesity.

Biomedicine and Pharmacotherapy. 159: 114244. • IF 6.9

Segarra-Medina C., Alseekh S., Fernie A.R., Rambla J.L., Pérez-Clemente R.M., Gómez-Cádenas A., Zandalinas S.I. (2023)

Abscisic acid promotes plant acclimation to the combination of salinity and high light stress.

Plant Physiology and Biochemistry. 3: 108008. • IF 5.437

Shen S., Wang S., Yang C., Wang C., Zhou Q., Zhou S., Zhang R., Li Y., Wang Z., Dai L., Peng W., Hao Y., Guo H., Cao G., Liu.X., Yao F., Xu Q., Fernie A.R., Luo J. (2023)

Elucidation of the melitidin biosynthesis pathway in pummelo.

Journal of Integrative Plant Biology. 65(11): 2505-2518. • IF 9.106

Shoaib M., Shah B., El-Sappagh S., Ali A., Ullah A., Alenezi.F., Gechev T., Hussain T., Ali F. (2023)

An advanced deep learning models-based plant disease detection: A review of recent research.

Frontiers in Plant Science. 14: 1158933. • IF 6.627

Siqueira J.A., Zhang Y., Nunes-Nesi A., Fernie A.R., Araújo W.L. (2023)

Beyond photorespiration: the significance of glycine and serine in leaf metabolism.

Trends Plant Science. 28(10): 1092-1094. • IF 22.012

Song Y.C., Das D., Zhang Y., Chen M.X., Fernie A.R., Zhu F.Y., Han J. (2023)

Proteogenomics-based functional genome research: approaches, applications, and perspectives in plants.

Trends Biotechnology. 41(12): 1532-1548. • IF 21.942

Sreenivasulu N., Alseekh S., Tiozon R.N Jr., Graner A., Martin C., Fernie A.R. (2023)

Metabolic signatures from genebank collections: An underexploited resource for human health?

Annual Review of Food Science and Technology. 14: 183-202. • IF 14.714

Su C., Kokosza A., Xie X., Pěnčík A., Zhang Y., Raumonen P., Shi X., Muranen S., Topcu M.K., Immanen J., Hagqvist R., Safronov O., Alonso-Serra J., Eswaran G., Venegas M.P., Ljung K., Ward S., Mähönen A.P., Himanen K., Salojärvi J., Fernie A.R., Novák O., Leyser O., Pałubicki W., Helariutta Y., Nieminen K. (2023)

Tree architecture: A strigolactone-deficient mutant reveals a connection between branching order and auxin gradient along the tree stem.

Proceedings of the National Academy of Sciences of the United States of America. 120(48): e2308587120. • IF 11.1

Sun Y., Alseekh S., Fernie A.R. (2023)

Plant secondary metabolic responses to global climate change: A meta-analysis in medicinal and aromatic plants.

Global Change Biology. 29(2): 477-504. • IF 13.211

Todorova V., Savova M.S., Ivanova, S., Ivanov K., Georgiev M.I. (2023)

Anti-adipogenic activity of Rhaponticum carthamoides and its secondary metabolites.

Nutrients. 15: 3061. • IF 4.8

Tong H., Laitinen R.A.E., Nikoloski Z. (2023)

Predicting plasticity of rosette growth and metabolic fluxes in Arabidopsis thaliana.

New Phytologyst. 40(1): 426-438. • IF 10.323

Vallarino J.G, Hong J., Wang S., Wang X., Sade N., Orf I., Zhang D., Shi J., Shen S., Cuadros-Inostroza Á., Xu Q., Luo J., Fernie A.R., Brotman Y. (2023)

Limitations and advantages of using metabolite-based genome-wide association studies: Focus on fruit quality traits.

Plant Science. 333: 111748. • IF 22.012

Varalakshmi S., Sahoo S., Singh N.K., Pareek N., Garkoti P., Senthilkumar V., Kashyap S., Jaiswal J.P., Jacob S.R., Nankar A.N. (2023)

Marker –Trait association for protein content among maize wild accessions and coix using SSR markers.

Agronomy. 13(8): 2138 • IF 3.949

Wan H., Zhang Y., Wu L., Zhou G., Pan L., Fernie A.R., Ruan Y.L. (2023)

Evolution of cytosolic and organellar invertases empowered the colonization and thriving of land plants.

Plant Physiology. 193(2): 1227-1243. • IF 8.005

Wijesingha Ahchige M, Fernie A.R, Alseekh S. (2023)

PANTOTHENATE KINASE4, LOSS OF GDU2, and TRANSPOSON PROTEIN1 affect the canalization of tomato fruit metabolism.

Plant Physiology.192(1): 442-468. • IF 8.005

Xie J.Q., Zhou X., Jia Z.C., Su C.F., Zhang Y., Fernie A.R., Zhang J., Du Z.Y., Chen M.X. (2023)

Alternative splicing, an overlooked defense frontier of plants with respect to bacterial infection.

Journal of Agricultural and Food Chemistry. 71(45): 16883 –16901. • IF 8.5

Zahmanova G., Aljabali A.A., Takova K., Toneva V., Tambuwala M.M., Andonov A.P., Lukov G.L., Minkov I. (2023)

The plant viruses and molecular farming: How beneficial they might Be for human and animal health?

International Journal of Molecular Sciences. 24(2): 1533. • IF 6.208

Zahmanova G, Aljabali A.A., Takova K., Minkov G., Tambuwala M.M., Minkov I., Lomonossoff G.P. (2023)

Green biologics: Harnessing the power of plants to produce pharmaceuticals.

International Journal of Molecular Sciences.24(24): 17575. • IF 6.208

Zahmanova G., Takova K., Tonova V., Koynarski T., Lukov L.L., Minkov I., Pishmisheva M., Kotsev S., Tsachev I., Baymakova. M. (2023)

The re-emergence of Hepatitis E virus in europe and vaccine development.

Viruses. 15(7): 1558. • IF 4.700

Zemach I., Alseekh S., Tadmor-Levi R., Fisher J., Torgeman S., Trigerman S., Nauen J., Hayut S.F., Mann V., Rochsar E., Finkers R., Wendenburg R., Osorio S., Bergmann S., Lunn J.E., Semel Y., Hirschberg J., Fernie A.R., Zamir D. (2023)

Multi-year field trials provide a massive repository of trait data on a highly diverse population of tomato and uncover novel determinants of tomato productivity.

The Plant Journal. 116(4): 1136-1151. • IF 7.091

Zhang Y., Jaime S.M., Bulut M., Graf A., Fernie A.R. (2023)

Multi-year field trials provide a massive repository of trait data on a highly diverse population of tomato and uncover novel determinants of tomato productivity.

The Plant Journal. 116(4): 1136-1151. • IF 7.091

Zhang Y., Jaime S.M, Bulut M., Graf A., Fernie A.R. (2023)

The conditional mitochondrial protein complexome in the Arabidopsis thaliana root and shoot.

Plant Communications. 4(5): 100635. • IF 10.5

Zhang K., He Y., Lu X., Shi Y., Zhao H., Li X., Li J., Liu Y., Ouyang Y., Tang Y., Ren X., Zhang X., Yang W., Sun Z., Zhang C., Quinet M., Luthar Z., Germ M., Kreft I., Janovska D., Meglic V., Pipan B., Georgiev M.I., Bruno S., Chapman M.A. Zhou M. (2023)

Comparative and population genomics of buckwheat species reveal key determinants of flavor and fertility.

Molecular Plant. 16(9): 1427-1444. • IF 27.5

Zhang Y., Fernie A.R. (2023)

Leveraging glycoside-targeted metabolomics to gain insight into biological function.

Trends in Plant Science. (7): 737-739. • IF 22.012

Zhang Y., Fernie A.R. (2023)

The role of TCA cycle enzymes in plants.

Advanced Biology. (7): 737-739. • IF 22.012

Zhang Y., Chen M., Liu T., Qin K., Fernie A.R. (2023)

TECHNICAL ADVANCE: Investigating the dynamics of protein-protein interactions in plants.

Plant Journal. 114(4): 965-983. • IF 7.091

Zhao H., He Y., Zhang K., Li S., Chen Y., He M., He F., Gao B., Yang D., Fan Y., Zhu X., Yan M., Giglioli-Guivarc’h N., Hano C., Fernie A.R., Georgiev M.I., Janovska D., Meglic V., Zhou M. (2023)

Rewiring of the seed metabolome during Tartary buckwheat domestication.

Plant Biotechnology Journal. 21(1): 150-164. • IF 13.263

Zhao L., Wang H., Martins P.D., Van Dongen J.T., Bolger A.M., Schmidt R.R., Jing H., Mueller-Roeber B., Schippers J.H.M. (2023)

The Arabidopsis thaliana onset of leaf death 12 mutation in the lectin receptor kinase P2K2 results in an autoimmune phenotype.

BMC Plant Biology. 23(1): 294. • IF 4.3

Zhang Y., Jaime M.S., Bulut M., Graf A., Fernie A.R. (2023)

The conditional mitochondrial protein complexes of Arabidopsis thaliana: differences between tissue-type and environmental conditions.

Plant Communications. 4(5): 100635. • IF 10.5

Zhang Y., Wiese L., Fang H., Alseekh S., Perez de Souza L., Scossa F., Molloy J., Christmann M., Fernie A.R. (2023)

Synthetic biology identifies the minimal gene set required for Paclitaxel biosynthesis in a plant chassis.

Molecular Plant. 16(12): 1951-1961. • IF 27.5

Zayed A., Farag M.A., Mehring A., Salem M.A., Ibrahim R.M., Alseekh S., Fernie A.R., Ulber R. (2023)

Methyl jasmonate elicitation effect on the metabolic profile of cambial meristematic cells culture derived from sweet basil (Ocimum basilicum L.) in relation to antioxidant activity: Untargeted metabolomics study in a time-based approach.

Phytochemistry. 213: 113777. • IF 4.004

Zhu F., Bulut M., Cheng Y., Alseekh S., Fernie A.R. (2023)

Metabolite-based genome-wide association studies of large-scale metabolome analysis to illustrate alterations in the metabolite landscape of plants upon responses to stresses.

Methods in Molecular Biology. 2642: 241-255.

Zhu F., Sun Y., Jadhav S.S., Cheng Y., Alseekh S., Fernie A.R. (2023)

The plant metabolic changes and the physiological and signaling functions in the responses to abiotic stress.

Methods in Molecular Biology. 2642: 129-150.

Zhu F., Wen W., Cheng Y., Alseekh S., Fernie A.R. (2023)

Integrating multiomics data accelerates elucidation of plant primary and secondary metabolic pathways.

aBIOTECH. 4(1): 47-56. • IF 3.6

Zhu F., Bao Y.J., Chen M., Zhang Y., Fernie A.R., Zhang J., Huang B.X., Cao F.L. (2023)

Emerging role of jasmonic acid in woody plant development.

Authorea. DOI: 10.22541/au.167420536.65415896/v1

2022

Ahouvi Y., Haber Z., Zach Y.Y., Rosental L., Toubiana D., Sharma D., Alseekh S., Tajima H., Fernie A.R., Brotman Y., Blumwald E., Sade N. (2022)

The alteration of tomato chloroplast vesiculation positively affects whole-plant source-sink relations and fruit metabolism under stress conditions.

Plant Cell Physiology. 63(12): 2008-2026. • IF 4.927

Amanda D., Frey F.P., Neumann U., Przybyl M., Šimura J., Zhang Y., Chen Z., Gallavotti A., Fernie A.R., Ljung K., Acosta I.F. (2022)

Auxin boosts energy generation pathways to fuel pollen maturation in barley.

Current Biology. 32(8): 1798-1811. • IF 10.834

Alshareef N.O., Otterbach S.L., Allu A.D., Woo Y.H., de Werk T., Kamranfar I., Mueller-Roeber B., Tester M, Balazadeh S., Schmöckel S.M. (2022)

NAC transcription factors ATAF1 and ANAC055 affect the heat stress response in Arabidopsis.

Scientific Reports. 12(1): 11264. • IF 4.996

Ayatollahi Z., Kazanaviciute V., Shubchynskyy V., Kvederaviciute K., Schwanninger M., Rozhon W., Stumpe M., Mauch F., Bartels S., Ulm R., Balazadeh S., Mueller-Roeber B, Meskiene I., Schweighofer A. (2022)

Dual control of MAPK activities by AP2C1 and MKP1 MAPK phosphatases regulates defence responses in arabidopsis.

Journal of Experimental Botany. 73(8): 2369 –2384. • IF 7.298

Bovdilova. A., Alexandre B.M., Höppner. A., Luís I.M., AlvarezC.E., Bickel D., Gohlke H., Decker C., Nagel-Steger L., Alseekh S., Fernie A.R., DrincovichM.F., Abreu I.A., Maurino V.G. (2022)

Corrigendum to: posttranslational modification of the NADP-malic enzyme Involved in C4 photosynthesis modulates the enzymatic activity during the day.

The Plant Cell. 34:(1) 698-699. • IF 11.277

Chen C., Liu F., Zhang K., Niu X., Zhao H., Liu Q., Georgiev M.I., Xu X., Zhang X., Zhou M. (2022)

MeJA-responsive bHLH transcription factor LjbHLH7 regulates cyanogenic glucoside biosynthesis in lotus japonicus.

Journal of Experimental Botany. 73(8): 2650-2665. • IF 7.298

Ding M., He Y., Zhang K., Li J., Shi Y., Zhao M., Meng Y., Georgiev M.I., Zhou M. (2022)

JA-induced FtBPM3 accumulation promotes FtERF-EAR3 degradation and rutin biosynthesis in Tartary buckwheat.

Plant Journal. 112(2): 323-334. • IF 7.091

Dorrell RG., Liang Y., Gueguen N., Nonoyama T., Zhang Y., Croteau D., Penot M., Adiba S., Bailleul B., Gros V., Karlusich J.P., Zweig N., Fernie A.R., Jouhet J., Maréchal E., Bowler C. (2022)

A Plastidial Glycolytic-Gluconeogenic Switch of Mitochondrial Origin Enables Diatom Adaptations to High Latitudes.

bioRxiv. DOI: doi.org/10.1101/2022.09.08.507166.

Fernie A.R., Alseekh S. (2022)

Metabolomic selection-based machine learning improves fruit taste prediction.

Proceedings of the National Academy of Sciences of the United States of America. 119 (9): e2201078119 • IF 12.779

Fernie A.R., Zhang Y. (2022)

The Bacillus subtilis glutamate anti-metabolon.

Nature Metabolism. 4: 161 –162. • IF 19.865

Gechev T., Petrov V. (2022)

Plant systems biology in 2022 and beyond.

International Journal of Molecular Sciences. 23: 415. • IF 6.208

He M., He Y., Zhang K., Lu X., Zhang X., Gao B., Fan Y., Zhao H., Jha R., Huda M.N., Tang Y., Wang J., Yang W., Yan M., Cheng J., Ruan J., Dulloo E., Zhang Z., Georgiev M.I., Chapman M., Zhou M. (2022)

Comparison of buckwheat genomes reveals the genetic basis of metabolomic divergence and ecotype differentiation.

New Phytologist. 235(5): 1927-1943. • IF 10.323

Hussain T., Shoaib M., Shah B., Ali A., Ullah A., Alenezi F., Gechev T., Farman Ali F., Syed I. (2022)

Deep learning-based model for plant lesion segmentation, subtype identification, and survival probability estimation.

Frontiers in Plant Science.13: 1095547. • IF 6.627

Ishihara H., Alseekh S., Feil R., Perera P., George G.M., Niedźwiecki P., Arrivault S., Zeeman S.C., Fernie A.R., Lunn J.E., Smith A.M., Stitt M. (2022)

Rising rates of starch degradation during daytime and trehalose 6-phosphate optimize carbon availability.

Plant Physiology. 189(4): 1976 –2000. • IF 8.005

Ivanova Z., Minkov G., Gisel A., Yahubyan G., Minkov I., Toneva V., Baev V. (2022)

The multiverse of plant small RNAs: How can we explore It?

International Journal of Molecular Sciences. 23(7): 3979 • IF 6.208

Jung J-W., Zahmanova G., Minkov I., Lomonossoff G.P. (2022)

Plant-based expression and characterization of SARS-CoV-2 virus-like particles presenting a native spike protein.

Plant Biotechnolgy Journal. 20(7): 1363-1372. • IF 13.263

Koschmieder J., Alseekh S, Shabani M., Baltenweck R., Maurino V.G., Palme K., Fernie A.R., Hugueney P., Welsch R. (2022)

Color recycling: metabolization of apocarotenoid degradation products suggests carbon regeneration via primary metabolic pathways.

Plant Cell Reports.41: 961 –977 • IF 4.964

Liu J., Wang Y., Wu J., Georgiev M.I., Xu B., Wong K.H., Bai W., Tian L. (2022)

Isolation, structural properties, and bioactivities of polysaccharides from mushrooms termitomyces: a review.

Journal of Agricultural and Food Chemistry. 70(1): 21-33. • IF 5.895

Marchev A.S, Amirova K., Georgiev M.I. (2022)

Genetic engineering of cell cultures for enhanced production of nutraceuticals. In T. Belwal, M.I. Georgiev, & J.M. Al-Khayri (Eds.).

Nutraceuticals Production from Plant Cell Factory. (pp. 395-415). Springer, Singapore.

Martínez-Rivas F.J., Blanco-Portales R., Molina-Hidalgo F.J., Caballero J.L., Perez de Souza L., Alseekh S., Fernie A.R., Muñoz-Blanco J., Rodríguez-Franco A. (2022)

Azacytidine arrests ripening in cultivated strawberry (fragaria × ananassa) by repressing key genes and altering hormone contents.

BMC Plant Biology. 22(1): 278. • IF 5.26

Martínez-Rivas F.J., Blanco-Portales R., Moyano E., Alseekh S., Caballero J.L., Schwab W., Fernie A.R., Muñoz-Blanco J., Molina-Hidalgo F.J. (2022)

Strawberry fruit FanCXE1 carboxylesterase is involved in the catabolism of volatile esters during the ripening process.

Horticulture Research. 9: uhac095 • IF 7.291

Mbebi A.J., Breitler J.C., Bordeaux M., Sulpice R., McHale M., Tong H., Toniutti L., Castillo J.A., Bertrand B., Nikoloski Z. (2022)

A comparative analysis of genomic and phenomic predictions of growth-related traits in 3-way coffee hybrids.

Genes Genomes Genetics. 12(9): jkac170. • IF 3.542

Mladenova S.G., Savova M.S., Marchev A.S., Ferrante C., Orlando G., Wabitsch M., Georgiev M.I. (2022)

Anti-adipogenic activity of maackiain and ononin is mediated via inhibition of PPARγ in human adipocytes.

Biomedicine and Pharmacotherapy. 149: 112908. • IF 7.419

Perra M., Fancello L., Castangia I., Allaw M., Escribano-Ferrer E., Peris J.E., Usach I., Manca M.L., Koycheva I.K., Georgiev M.I., Manconi M. (2022)

Formulation and testing of antioxidant and protective effect of hyalurosomes loading extract rich in rosmarinic acid biotechnologically produced from Lavandula angustifolia Miller.

Molecules. 27(8): 2423. • IF 6.064

Radeva-Ivanova V., Pasev G., Lyall R., Angelov M., Nankar A.N., Kostova D. (2022)

First report of cucurbit aphid-borne yellows virus causing yellowing disease on pumpkin (cucurbita pepo) and cucumber (cucumis sativus) in Bulgaria.

APS Journal. 106(9): 0191-2917. • IF 3.603

Rane R.N., Tapase S., Kanojia A., Watharkar A., Salama E., Jang M., Yadav K., Amin A.M., Pinto M.S., Cabral-Pinto, Jadhav P.J., Byong-Hun J. (2022)

Molecular insights into plant –microbe interactions for sustainable remediation of contaminated environment

Bioresource Technology. 344(B): 126246. • IF 11.889

Rocchetti. L., Gioia. T., Logozzo. G., Brezeanu. C., Pereira L.G., la Rosa L., Marzario S., Pieri A., Fernie A.R., Alseekh S., Susek K., Cook D.R., Varshney R.K., Agrawal S.K., Hamwieh A., Bitocchi, E., Papa R. (2022)

Towards the development, maintenance and standardized phenotypic characterization of single-seed-descent genetic resources for chickpea.

Current protocols. 2(2) :e371.

Powell A.F., Feder A., Li J., Schmidt M.H., Courtney L., Alseekh S., Jobson E.M, Vogel A., Xu Y, Lyon D., Dumschott K., McHale M., Sulpice R., Bao K., Lal R., Duhan A., Hallab A., Denton A.K., Bolger M.E., Fernie A.R., Hind S.R., Mueller L.A., Martin G.B., Fei Z., Martin C., Giovannoni J.J., Strickler S.R., Usadel B. (2022)

A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity

The Plant Journal. 110(6): 1791-1810. • IF 7.091

Sageman-Furnas K., Nurmi M., Contag M., Plötner B., Alseekh S., Wiszniewski A., Fernie A.R, Smith L.M., Laitinen RAE. (2022)

A. thaliana hybrids develop growth abnormalities through integration of stress, hormone and growth signalling.

Plant Cell Physiology. 63(7): 944-954. • IF 4.927

Salem M.A., Aborehab N.M., Al-Karmalawy A.A., Fernie A.R., Alseekh S., Ezzat S.M. (2022)

Potential valorization of edible nuts by-products: exploring the immune-modulatory and antioxidants effects of selected nut shells extracts in relation to their metabolic profiles.

Antioxidants. 11(3): 462. • IF 7.675

Salem M.A., El-Shiekh R.A., Fernie A.R., Alseekh S., Zayed A. (2022)

Metabolomics-based profiling for quality assessment and revealing the impact of drying of turmeric (Curcuma longa L.).

Scientific Report. 12(1): 10288. • IF 4.996

Salem M.A, Ezzat S.M, Ahmed K.A, Alseekh S., Fernie A.R, Essam R.M. (2022)

A comparative study of the antihypertensive and cardioprotective potentials of hot and cold aqueous extracts of Hibiscus sabdariffa L. in relation to their metabolic profiles.

Frontiers in Pharmacology. 13: 840478 • IF 5.988

Savova M.S., Todorova M.N., Apostolov A.G., Yahubyan G.T., Georgiev M.I. (2022)

Betulinic acid counteracts the lipid accumulation in Caenorhabditis elegans by modulation of nhr-49 expression.

Biomedicine and Pharmacotherapy. 156: 113862 • IF 7.419

Sayed S.M.A., Alseekh S., Siems K., Fernie A.R., Luyten W., Schmitz-Linneweber C., Saul N. (2022)

Identification of a hydroxygallic acid derivative, zingibroside R1 and a sterol lipid as potential active ongredients of cuscuta chinensis extract that has neuroprotective and antioxidant effects in aged caenorhabditis elegans.

Nutrients. 14(19): 4199 • IF 6.706

Sedaghatmehr M., Stüwe B., Mueller-Roeber B., Balazadeh S. (2022)

Heat shock factor HSFA2 fine-tunes resetting of thermomemory via plastidic metalloprotease FtsH6.

Journal of Experimental Botany. 73(18): 6394 –6404. • IF 7.298

Sieniawska E., Georgiev M.I. (2022)

Metabolomics: towards acceleration of antibacterial plant-based leads discovery.

Phytochemistry Reviews. 21: 765-781. • IF 7.741

Sujeeth N., Petrov V., Guinan K.J., Rasul F., O’Sullivan J., Gechev T. (2022)

Current insights into the molecular mode of action of seaweed-based biostimulants and the sustainability of seaweeds as raw material resources.

International Journal of Molecular Sciences. 23(14): 7654. • IF 6.208

Simeoni F., Skirycz A., Simoni L., Castorina G., De Souza L.P., Fernie A.R., Alseekh S., Giavalisco P., Conti L., Tonelli C., Galbiati M. (2022)

The AtMYB60 transcription factor regulates stomatal opening by modulating oxylipin synthesis in guard cells.

Scientific Report. 12: 533. • IF 4.996

Stefan T., Wu X.N., Zhang Y., Fernie A.R., Schulze W.X. (2022)

Regulatory modules of metabolites and protein phosphorylation in arabidopsis genotypes with altered sucrose allocation.

Frontiers in Plant Science. 13: 891405. • IF 6.627

Tabatabaei I., Alseekh S., Shahid M., Leniak E., Wagner M., Mahmoudi H., Thushar S., Fernie A.R., Murphy K.M., Schmockel S.M., Tester M., Mueller-Roeber B., Skirycz A., Balazadeh S. (2022)

The diversity of quinoa morphological traits and seed metabolic composition.

Scientific Data. 9: 323. • IF 8.501

Timm S., Klaas N., Niemann J., Jahnke K., Alseekh S., Zhang Y., Souza P. V., Hou L.Y., Geigenberger P., Daloso D.M. (2022)

Simultaneous adjustments of major mitochondrial pathways through redox regulation of dihydrolipoamide dehydrogenase (mtLPD1).

bioRxiv. doi: https://doi.org/10.1101/2022.04.02.486831

Todorova V., Ivanova S., Georgieva Y., Nalbantova V., Karcheva-Bahchevanska D., Benbassat N., Savova M.S., Georgiev M.I., Ivanov K. (2022)

Chemical composition and histochemical localization of essential oil from wild and cultivated rhaponticum carthamoides roots and rhizomes.

Plants. 11(15): 2061. • IF 4.658

Tong H., Nankar A.N., Liu J., Todorova V., Ganeva D., Grozeva S., Tringovska I., Pasev Gancho., Radeva-Ivanova V., Gechev T., Kostova D., Nikoloski Z. (2022)

Genomic prediction of morphometric and colorimetric traits in Solanaceous fruits.

Horticulture Research. Horticulture Research 9: uhac072. • IF 7.3 (Q1)

Vallarino J.G., Shameer S., Zhang Y, Ratcliffe G.R, Sweetlove J.L, Fernie A.R. (2022)

Leaf specific overexpression of a mitochondrially-targeted glutamine synthetase in tomato increased assimilate export resulting in earlier fruiting and elevated yield.

bioRxiv. DOI: https://doi.org/10.1101/2022.06.28.497938

Zhang Y., Fernie A.R. (2022)

Metabolite profiling of Arabidopsis mutants of lower glycolysis

Scientific Data. 9(1): 614. • IF 8.501

Zahmanova G., Takova K., Valkova R., Toneva V., Minkov I., Andonov A., Lukov G.L. (2022)

Plant-derived recombinant vaccines against zoonotic viruses.

Life. 12(2): 156. • IF 3.251

Zareen S., Ali A., Lim C.J., Khan H.A., Park J., Xu Z.Y., Yun D.J. (2022)

The transcriptional corepressor HOS15 mediates dark-Induced leaf senescence in arabidopsis.

Frontiers in Plant Science. 13: 828264. • IF 6.627

Zhang Y., Fernie A.R. (2022)

Dynamically regulating metabolic fluxes with synthetic metabolons.

Trends in Biotechnology. 40(9): 1019-1020. • IF 21.942

Zhou J., Liu C., Chen Q., Liu L., Niu S., Chen R., Li K., Sun Y., Shi Y., Yang C., Shen S., Li Y., Xing J,. Yuan H., Liu X., Fang C., Fernie A.R., Luo J. (2022)

Integration of rhythmic metabolome and transcriptome provides insights into the transmission of rhythmic fluctuations and temporal diversity of metabolism in rice.

Science China Life Sciences. 65: 1794 –1810. • IF 10.372

Zhou W., Georgiev M.I., Liao P. (2022)

Editorial: Discovery, biosynthesis, regulation, transport, release and engineering of plant natural products.

Frontiers in Plant Science. 13:1017808. • IF 6.627

Zhu F., Alseekh S., Wen W., Cheng Y., Fernie A.R.. (2022)

Genome-wide association studies of arabidopsis dark-induced senescence reveals signatures of autophagy in metabolic reprogramming.

Autophagy. 18: 457-458. • IF 13.391

Zhu F., Alseekh S., Koper K., Tong H., Nikoloski Z., Naake T., Liu H., Yan J., Brotman Y., Wen W., Maeda H., Cheng Y., Fernie A.R. (2022)

Genome-wide association of the metabolic shifts underpinning dark-induced senescence in Arabidopsis.

The Plant Cell. 34(1): 557-578. • IF 11.277

Zhu F., Ahchige M.W., Brotman Y., Alseekh S., Zsogon A., Fernie A.R. (2022)

Bringing more players into play: leveraging stress in genome wide association studies.

Journal of Plant Physiology. 271: 153657. • IF 3.686

Zhu F., Jadhav S.S., Tohge T., Salem M.A., Li J.M., Giovannoni J.J., Cheng Y., Alseekh S., Fernie A.R. (2022)

A comparative transcriptomics and eQTL approach identifies SlWD40 as a tomato fruit ripening regulator.

Plant Physiology. 190(1): 250 –266. • IF 7.4

2021

Aarabi F., Rakpenthai A., Barahimipour R., Gorka M., Alseekh S., Zhang Y., Salem M. A., Brückner F., Omranian N., Watanabe M., Nikoloski Z., Giavalisco P., Tohge T., Graf A., Fernie A.R., Hoefgen R. (2021)

Sulfur deficiency-induced genes affect seed protein accumulation and composition under sulfate deprivation.

Plant Physiology. 187(4): 2419 –2434. • IF 8.340

Alseekh S., Aharoni A., Brotman Y., Contrepois K., D’Auria J., Ewald C.J., Ewald J., Fraser P.D., Giavalisco P., Hall R.D., Heinemann M., Link H., Luo J., Neumann S., Nielsen J., Leonardo Souza P., Saito K., Sauer U., Schroeder C.F., Schuster S., Siuzdak, G., Skirycz A., Sumner W.L., Snyder P.M., Tang H., Tohge T., Wang Y., Wen W., Wu S., Xu G., Nicola Zamboni N., R. Fernie A.R. (2021)

Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices.

Nature Methods. 18: 747 –756. • IF 28.547

Alseekh S., Fernie A.R. (2021)

Using metabolomics to assist plant breeding.

Methods in Molecular Biology. 2264: 33-46.

Alseekh S., Kostova D., Mustafa B., Fernie A.R. (2021)

Genome-wide association studies: assessing trait characteristics in model and crop plants.

Cellular and Molecular Life Sciences. 78: 5743 –5754. • IF 9.261

Alseekh S., Scossa F., Wen W., Luo J., Yan J., Beleggia R., Klee H.J., Huang S., Papa R., Fernie A.R. (2021)

Domestication of crop metabolomes: desired and unintended consequences.

Trends in Plant Science. 26(6): 650-661. • IF 18.313

Amirova K.M., Dimitrova P.A., Marchev A.S., Krustanova S., Simova S., Alipieva K., Georgiev M.I. (2021)

Biotechnologically-produced myconoside and calceolarioside E induce Nrf2-expression in neutrophils.

International Journal of Molecular Sciences. 22(4): 1759. • IF 6.208

Atanasov A.G., Zotchev S.B., Dirsch V.M., Orhan I.E., Banach M., Rollinger J.M., Barreca D., Weckwerth W., Bauer R., Bayer E.A., Majeed M., Bishayee A., Bochkov V., Bonn G.K., Braidy N., Bucar F., Cifuentes A., D’Onofrio G., Bodkin M., Diederich M., Dinkova-Kostova A.T., Efferth T., El Bairi K., Arkells N., Fan T-P., Fiebich B.L., Freissmuth M., Georgiev M.I. et al. (2021)

Natural products in drug discovery: advances and opportunities.

Nature Reviews Drug Discovery. 20: 200-216. • IF 112.288

Baev V., Ivanova Z., Yahubyan G., Toneva V., Apostolova E., Minkov G., Minkov I. (2021)

Analysis of the complete mitochondrial genome sequence of the resurrection plant Haberlea rhodopensis.

Acta Biochim Pol. 68(2): 277-286. • IF 2.149

Bellucci E., Aguilar O.M., Alseekh S., Bett K., Brezeanu C., Cook D., De la Rosa L., Delledonne M., Dostatny D.F., Ferreira J.J., Geffroy V., Ghitarrini S., Kroc M., Kumar Agrawal S, Logozzo G., Marino M., Mary-Huard T., McClean P., Meglič V., Messer T., Muel F., Nanni L., Neumann K., Servalli F., Străjeru S., Varshney R. K., Vasconcelos M. W., Zaccardelli M., Zavarzin A., Bitocchi E., Frontoni E., Fernie A.R., Gioia T., Graner A., Guasch L., Prochnow L., Opperman M., Susek K., Tenaillon M., Papa R. (2021)

The INCREASE project: Intelligent collections of food-legume genetic resources for european agrofood systems.

The Plant Journal. 108(3): 646-660. • IF 6.417

Brotman Y., Llorente-Wiegand C., Oyong G., Badoni S., Misra G., Anacleto R., Parween S., Pasion E., Jr. Tiozon R.N., Anonuevo J.J., deGuzman M.K., Alseekh S., Mbanjo E.G.N., Boyd L.A., Fernie A.R., Sreenivasulu N. (2021)

The genetics underlying metabolic signatures in a brown rice diversity panel and their vital role in human nutrition.

The Plant Journal. 106(2): 507-525. • IF 6.417

Bulut M., Fernie A.R., Alseekh S. (2021)

Large-scale multi-omics genome-wide association studies (Mo-GWAS): guidelines for sample preparation and normalization.

Jove-Journal of Visualized Experiments. DOI: 10.3791/62732. • IF 1.355

Cervela-Cardona L., Yoshida T., Zhang Y., Okada M., Fernie A.R., Mas P., (2021)

Circadian control of metabolism by the clock component TOC1.

12: 1126. • IF 5.753

Cortinovis G., Oppermann M., Neumann K., Graner A., Gioia T., Marsella M., Alseekh S., Fernie A.R., Papa R., Bellucci E., Bitocchi E. (2021)

Towards the development, maintenance, and standardized phenotypic characterization of single-seed-descent genetic resources for common bean.

Current protocols. 1(5): e133.

Ding M., Zhang K., He Y., Zuo Q., Zhao H., He M., Georgiev M.I., Park S.U., Zhou M. (2021)

FtBPM3 modulates the orchestration of FtMYB11-mediated flavonoids biosynthesis in Tartary buckwheat.

Plant Biotechnology Journal. 19(7): 1285-1287. • IF 13.263

Di Vittori V., Bitocchi E., Rodriguez M., Alseekh S., Bellucci E., Nanni L., Gioia T., Marzario S., Logozzo G., Rossato M., De Quattro C., Murgia M.L., Ferreira J.J., Campa A., Xu C., Fiorani F., Sampathkumar A., Fröhlich A., Attene G., Delledonne M., Usadel B., Fernie A.R., Rau D., Papa R. (2021)

Pod indehiscence in common bean is associated with the fine regulation of PvMYB26.

Journal of Experimental Botany. 72: 1617-1633. • IF 7.298

Dominguez P.G., Conti G., Duffy T., Insani M., Alseekh S., Asurmendi S., Fernie A.R., Carrari F. (2021)

Multiomics analyses reveal the roles of the ASR1 transcription factor in tomato fruits.

Journal of Experimental Botany. 72(18): 6490 –6509. • IF 7.298

Duarte G. T., Pandey P. K., Vaid N., Alseekh S., Fernie A.R., Nikoloski Z., Laitinen. R. (2021)

Plasticity of rosette size in response to nitrogen availability is controlled by an RCC1-family protein.

Plant cell and environment. 44(10) :3398-3411. • IF 7.228

Fadoul H.E, Martínez Rivas F.J, Neumann K., Balazadeh S., Fernie A.R., Alseekh S. (2021)

Comparative molecular and metabolic profiling of two contrasting wheat cultivars under drought stress.

International Journal of Molecular Sciences. 22(24) :13287. • IF 6.208

Fernie A.R., Alseekh S. (2021)

Unravelling the molecular networks that regulate kiwifruit flavor.

New Phytologist. 233(1): 373 –389. • IF 10.323

Fernie A.R., Alseekh S., Liu J., Yan J. (2021)

Using precision phenotyping to inform de novo domestication.

Plant Physiology. 186(3): 1397 –1411. • IF 8.340

Gechev T., Lyall R., Petrov V., Bartels D. (2021)

Systems biology of resurrection plants.

Cellular and Molecular Life Sciences. 78: 6365 –6394. • IF 9.261

Georgiev M.I., Vasileva L.V., Savova M.S. (2021)

Antiobesity molecules of natural origin: Call for lead finding acceleration.

Food Frontiers. 2(1): 23-24.

Grozeva S., Pasev G., Radeva-Ivanova V., Todorova V., Ivanova V., Nankar A.N. (2021)

Double haploid development and assessment of androgenic competence of Balkan pepper core collection in Bulgaria.

Plants. 10(11): 2414. • IF 4.658

Grozeva S., Todorova V., Nankar A.N. (2021)

Creation of pepper doubled haploids and morphological characterization of androgenic plants.

Euphytica. 217: 113. • IF 1.895

Gutsch A., Hendrix S., Guerriero G., Renaut J., Lutts S., Alseekh S., Fernie A.R., Hausman J.F., Vangronsveld J., Cuypers A., Sergeant K. (2020)

Long-Term Cd exposure alters the metabolite profile in stem tissue of Medicago sativa.

Cells. 9(12): 2707. • IF 6.600

He Y., Zhang K., Georgiev M.I., Zhou M. (2021)

Ubiquitin proteins and the orchestration of transcription factors activity.

Critical Reviews in Plant Sciences. 40(4): 366-377. • IF 5.289

Huda N.Md., Lu S., Jahan T., Ding M., Jha R., Zhang K., Zhang W., Georgiev M.I., Park S-U., Zhou M. (2021)

Treasure from garden: bioactive compounds of buckwheat.

Food Chemistry. 335: 127653. • IF 9.231

Jin C., Fang C., Zhang Y., Fernie A.R., Luo J. (2021)

Plant metabolism paves the way for breeding crops with high nutritional value and stable yield.

Science China-Life Sciences. 64: 2202 –2205. • IF 6.038

Jiang L., Yoshida T., Stiegert S., Jing, Y., Alseekh S., Lenhard M., Pérez-Alfocea F., Fernie A.R. (2021)

Multi-omics approach reveals the contribution of KLU to leaf longevity and drought tolerance.

Plant Physiology. 185(2): 352 –368. • IF 8.340

John S., Jadwiga Olas J., Mueller-Roeber B.. (2021)

Regulation of alternative splicing in response to temperature variation in plants.

Journal of Experimental Botany. 72(18): 6150 –6163. • IF 7.298

Jorge T. F., Ramalho J. C., Alseekh S., Pais I. P., Leitão A. E., Rodrigues A. P., Scotti-Campos P., Ribeiro-Barros A. I., Fernie A. R., António C. (2021)

Will Casuarina glauca stress resilience be maintained in the face of climate change?.

Metabolites. 11(9): 593. • IF 4.932

Joshi J., Hasnain G., Logue T., Lynch M., Wu S., Guan J.C., Alseekh S., Fernie A.R., Hanson A.D., McCarty D.R. (2021)

A core metabolome response of maize leaves subjected to long-duration abiotic stresses.

Metabolites. 11(11): 797. • IF 4.932

Kanojia A., Shrestha K.D., Dijkwel P. (2021)

Primary metabolic processes as drivers of leaf ageing.

Cellular and Molecular Life Sciences. 78: 6351 –6364 • IF 9.261

Kerbler M. S., Natale R., Fernie A.R., Zhang Y. (2021)

From affinity to proximity techniques to investigate protein complexes in plants.

International Journal of Molecular Sciences. 22(13): 7101. • IF 6.203

Koycheva I.K., Mihaylova L.V., Todorova M.N., Balcheva-Sivenova Z.P., Alipieva K., Ferrante C., Orlando G., Georgiev M.I. (2021)

Leucosceptoside a from devil’s claw modulates psoriasis-like inflammation via suppression of the PI3K/AKT signaling pathway in keratinocytes

Molecules. 26: 7014. • IF 4.927

Koycheva I.K., Vasileva L.V., Amirova K.M., Marchev A.S., Balcheva-Sivenova Z.P., Georgiev M.I. (2021)

Biotechnologically-produced Lavandula angustifolia Mill. extract rich in rosmarinic acid resolves psoriasis-related inflammation through JAK/STAT signaling.

Frontiers in Pharmacology. 12: 680168. • IF 5.988

Kroc M., Tomaszewska M., Czepiel K., Bitocchi E., Oppermann M., Neumann K., Guasch L., Bellucci E., Alseekh S., Graner A., Fernie A.R., Papa R., Susek K.. (2021)

Towards development, maintenance, and standardized phenotypic characterization of single-seed-descent genetic besources for lupins.

Current Protocols. 1(7): e191.

Li J., Meng Y., Zhang K., Li Q., Li S., Xu B., Georgiev M.I., Zhou M. (2021)

Jasmonic acid-responsive RRTF1 transcription factor controls DTX18 gene expression in hydroxycinnamic acid amide secretion

Plant Physiology. 185(2): 369 –384. • IF 8.005

Marchev A.S., Vasileva L.V., Amirova K.M., Savova M.S., Balcheva-Sivenova Z.P., Georgiev M.I. (2021)

Metabolomics and health: from nutritional crops and plant-based pharmaceuticals to profiling of human biofluids.

Cellular and Molecular Life Sciences. 78: 6487 –6503 • IF 9.234

Marchev A.S., Vasileva L.V., Amirova K.M., Savova M.S., Koycheva I.K., Balcheva-Sivenova Z.P., Vasileva S.M., Georgiev M.I. (2021)

Rosmarinic acid – from bench to valuable applications in food industry.

Trends in Food Science and Technology. 117: 182-193. • IF 16.002

Mbebi AJ, Tong H, Nikoloski Z. (2021)

L2,1-norm regularized multivariate regression model with applications to genomic prediction.

Bioinformatics. 37(18): 2896-904. • IF 6.937

Mladenova S.G., Vasileva L.V., Savova M.S., Marchev A.S., Tews D., Wabitsch M., Ferrante C., Orlando G., Georgiev M.I. (2021)

Anti-adipogenic effect of Alchemilla monticola is mediated via PI3K/AKT signaling inhibition in human adipocytes

Frontiers in Pharmacology. 12: 707507 • IF 5.988

Moreno J. C., Vicente R., Bruno E. R., Gorka M., Kosmacz M., Peralta-Ariza J. S., Zhang Y., Saleh A., Dorothee C., Luzarowski M., Nikoloski Z., Hartman M. D., Figueroa C. M., Iglesias A. A., Fernie A.R., A. Skirycz (2021)

Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism.

EMBO Journal. 40(15): e106800. • IF 11.598

Nankar A.N., Pratt R.C. (2021)

Genotyping by sequencing reveals genetic relatedness of southwestern U.S. blue maize landraces.

International Journal of Molecular Sciences. 22(7): 3436. • IF 6.208

Nankar A.N., Scott MP., Pratt RC. (2021)

Compositional analyses reveal relationships among grain components in anthocyanin pigmented blue maize grains.

Plants. 9 (12): 1775. • IF 3.935

Pereira L., Sapkota M., Alonge M., Zheng Y., Zhang Y., Razifard H., Taitano N.K., Schatz M., Lipman Z., Fernie A.R., Wang Y, Fei Z, Caicedo A.L., Tieman D.M., Knaap E., (2021)

Natural genetic diversity in tomato flavor genes.

Frontiers in Plant Science. 12: 914. • IF 5.753

Omidbakhshfard M. A., Sokolowska E. M., Di Vittori V., Perez de Souza L., Kuhalskaya A., Brotman Y., Alseekh S., Fernie A.R., Skirycz, A.. (2021)

Multi-omics analysis of early leaf development in Arabidopsis thaliana.

Patterns. 2(4): 100235.

Omranian S., Angeleska A., Nikoloski Z. (2021)

PC2P: Parameter-free network-based prediction of protein complexes.

Bioinformatics. 37(1): 73 –81. • IF 6.937

Perez de Souza L., Alseekh S., Scossa F., Fernie A.R. (2021)

Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research.

Nature Methods. 18: 733 –746. • IF 28.547

Qin K., Fernie A.R., Zhang Y. (2021)

The assembly of super-complexes in the plant chloroplast.

Biomolecules. 11(12) :1839. • IF 4.879

Rasul F., Gupta S., Olas J.J., Gechev T., Sujeeth N., Mueller-Roeber B. (2021)

Priming with a seaweed extract strongly improves drought tolerance in Arabidopsis.

International Journal of Molecular Sciences. 22: 1469. • IF 6.208

Ren Y., Li M., Guo S., Sun H., Zhao J., Zhang J., Liu G., He H., Tian S., Yu Y., Gong G., Zhang H., Zhang X., Alseekh S., Fernie A.R., Scheller H.V., Xu Y. (2021)

Evolutionary gain of oligosaccharide hydrolysis and sugar transport enhanced carbohydrate partitioning in sweet watermelon fruits.

The Plant Cell. 33(5): 1554 –1573. • IF 11.277

Salem M. A., Zayed A., Alseekh S., Fernie A. R., Giavalisco P. (2021)

The integration of MS-based metabolomics and multivariate data analysis allows for improved quality assessment of zingiber officinale Roscoe.

Phytochemistry. 190: 112843. • IF 4.072

Savova M.S., Vasileva L.V., Mladenova S.G., Amirova K.M., Ferrante C., Orlando G., Wabitsch M., Georgiev M.I. (2021)

Ziziphus jujuba Mill. leaf extract restrains adipogenesis by targeting PI3K/AKT signaling pathway.

Biomedicine and Pharmacotherapy. 141: 111934. • IF 7.419

Scossa F., Alseekh S., Fernie A.R. (2021)

Integrating multi-omics data for crop improvement.

Journal of Plant Physiology. 257: 153352. • IF 3.549

Scossa F., Fernie A.R. (2021)

Ancestral sequence reconstruction – An underused approach to understand the evolution of gene function in plants?

Computational and Structural Biotechnology Journal. 19: 1579 –1594. • IF 7.271

Scossa F., Fernie A.R. (2021)

When a Crop Goes Back to the Wild: Feralization.

Trends in Plant Science. 26(6): 543 –545. • IF 18.313

Sieniawska E., Sawicki R., Truszkiewicz W., Marchev A.S., Georgiev M.I. (2021)

Usnic acid treatment changes the composition of Mycobacterium tuberculosis cell envelope and alters bacteria redox status.

mSystems. 6(3): e00097-21. • IF 7.331

Shi M., Liao P., Nile S.H., Georgiev M.I., Kai G. (2021)

Biotechnological exploration of transformed root culture for value-added products.

Trends in Biotechnology. 39(2): 137-149. • IF 21.942

Staykov N.S., Angelov M., Petrov V., Minkov P., Kanojia A., Guinan K.J., Alseekh S., Fernie A.R., Neerakkal S., Gechev T. (2021)

An Ascophyllum nodosum-derived biostimulant protects model and crop plants from oxidative stress.

Metabolites. 11(1): 24. • IF 4.932

Takova K., Koynarski T., Minkov G., Toneva V., Mardanova E., Ravin N., Lukov G.L., Zahmanova G. (2021)

Development and optimization of an enzyme immunoassay to detect serum antibodies against the Hepatitis E virus in pigs, using plant-derived ORF2 recombinant protein.

Vaccines. 9(9): 991. • IF 4.961

Tong H., Nikoloski Z. (2021)

Machine learning approaches for crop improvement: leveraging phenotypic and genotypic big data

Journal of Plant Physiology. 257: 153354. • IF 3.549

Tong H., Küken A., Razaghi-Moghadam Z., Nikoloski Z. (2021)

Characterization of effects of genetic variants via genome-scale metabolic modelling.

Cellular and Molecular Life Sciences. 78: 5123 –5138. • IF 9.261

Vasileva L.V., Savova M.S., Tews D., Wabitsch M., Georgiev M.I. (2021)

Rosmarinic acid attenuates obesity and obesity-related inflammation in human adipocytes.

Food and Chemical Toxicology. 149: 112202. • IF 5.572

Wu T., Kerbler M.S., Fernie A.R., Zhang Y. (2021)

Plant cell cultures as heterologous bio-factories for secondary metabolite production.

Plant Communications. 2(5): 100235.

Wang J. Y., Alseekh S., Xiao T., Ablazov A., Perez de Souza L., Fiorilli V., Anggarani M., Lin P. Y., Votta C., Novero M., Jamil M., Lanfranco L., Hsing Y. C., Blilou I., Fernie A. R., Al-Babili S. (2021)

Multi-omics approaches explain the growth-promoting effect of the apocarotenoid growth regulator zaxinone in rice.

Communications Biology. 4(1): 1222 • IF 6.268

Yang C., Shen S., Zhou S., Li Y., Mao Y., Zhou J., Shi Y., An L., Zhou Q., Peng W., Lyu Y., Liu X., Chen W., Wang S., Qu L., Liu X., Fernie A.R., Luo, J. (2021)

Rice metabolic regulatory network spanning its entire life cycle.

Molecular Plant. 15(2) :258-275. • IF 13.164

Zahmanova G., Mazalovska M., Takova K., Toneva V., Minkov I., Peyret H., Lomonossoff G. (2021)

Efficient production of chimeric Hepatitis B virus-like particles bearing an epitope of Hepatitis E virus capsid by transient expression in Nicotiana benthamiana.

Life. 11(1): 64. • IF 3.817

Zhang K., He M., Fan Y., Zhao H., Gao B., Yang K., Li F., Tang Y., Gao Q., Lin T., Quinet M., Janovska D., Meglič V., Kwiatkowski J., Romanova O., Chrungoo N., Suzuki T., Luthar Z., Germ M., Woo S-H., Georgiev M.I., Zhou M. (2021)

Resequencing of global Tartary buckwheat accessions reveals multiple domestication events and key loci associated with agronomic traits

Genome Biology. 22: 23. • IF 18.001

Zhang Y., Fernie A.R. (2021)

Stable and temporary enzyme complexes and metabolons involved in energy and redox metabolism.

Antioxidants and Redox Signaling. 35(10): 788-807. • IF 8.401

Zhang Y., Giese J., Kerbler M. S., Siemiatkowska B., Souza P. L., Medeiros D., Alpers J., Hinicha K. D., Daloso M. D., Stitt M., Finkemeier I., Fernie A.R. (2021)

Two mitochondrial phosphatases, PP2c63 and Sal2, are required for posttranslational regulation of the TCA cycle in Arabidopsis.

Molecular Plant. 14(7): 1104-1118. • IF 13.164

Zhang Y., Scossa, F., Fernie A. R. (2021)

The genomes of Taxus species unveil novel candidates in the biosynthesis of taxoids.

Molecular Plant. 14(11): 1773-1775. • IF 13.164

Zhang W., Luo C., Scossa F., Zhang Q., Usadel B., Fernie A.R., Mei H., Wen W. (2021)

A phased genome based on single sperm sequencing reveals crossover pattern and complex relatedness in tea plants.

Plant Journal. 105(1): 197 –208. • IF 7.091

Zimmermann S., Benstein M.R., Flores-Tornero, Samira Blau S., Anoman A., Rosa-Téllez A.S., Gerlich C.S., Salem A.M., Alseekh S., Kopriva, S., Vera Wewer, V., Flügge U., Jacoby P.R., Fernie A.R., Giavalisco P., Roc Ros R., Krueger S. (2021)

The phosphorylated pathway of serine biosynthesis links plant growth with nitrogen metabolism.

Plant Physiology. 186(3): 1487 –1506. • IF 8.340

2020

Aksenov A.A., Laponogov I., Zhang Z., Doran S.L.F., Belluomo I., Veselkov D., Bittremieux W., Nothias L.F., Nothias-Esposito M., Maloney K.N., Misra B.B., Melnik A.V., Smirnov A., Du X., Jones II K.L., Dorrestein K., Panitchpakdi M., Ernst M., van der Hooft J.J.J., Gonzalez M., Carazzone C., Amézquita A., Callewaert C., Morton J.T., Quinn R.A., Bouslimani A., Orio A.A., Petras D., Smania A.M., Couvillion S.P., Burnet M.C., Nicora C.D., Zink E., Metz T.O., Artaev V., Humston-Fulmer E., Gregor R., Meijler M.M., Mizrahi I., Eyal S., Anderson B., Dutton R., Lugan R., Boulch P.L., Guitton Y., Prevost S., Poirier A., Dervilly G., Le Bizec B., Fait A., Persi N.S., Song C., Gashu K., Coras R., Guma M., Manasson J., Scher J.U., Barupal D.K., Alseekh S., Fernie A.R., Mirnezami R., Vasiliou V., Schmid R., Borisov R.S., Kulikova L.N., Knight R., Wang M., Hanna G.B., Dorrestein P.C., Veselkov K. (2020)

Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data

Nature Biotechnology. 39: 169 –173. • IF 54.908

Alseekh S., Ofner I., Liu Z., Osorio S., Vallarino J., Last R., Zamir D., Tohge T., Fernie A.R. (2020)

Quantitative trait loci analysis QTL of seed specialized metabolites reveals seed-specific flavonols and differential regulation of glycoalkaloid content in tomato

The Plant Journal. 103(6): 2007-2024. • IF 6.417

Alseekh S., Perez de Souza L., Benina M., Fernie A.R. (2020)

The style and substance of plant flavonoid decoration; towards defining both structure and function

Phytochemistry. 174: 112347. • IF 4.072

Alseekh S., Scossa F., Fernie A.R. (2020)

Mobile transposable elements shape plant genome diversity

Trends in Plant Science. 28:S1360-1385(20)30250-8. • IF 18.313

Apostolova E., Gozmanova M., Nacheva L., Ivanova Z., Toneva V., Minkov I., Baev, V., Yahubyan, G. (2020)

MicroRNA profiling the resurrection plant Haberlea rhodopensis unveils essential regulators of survival under severe drought

Biologia Plantarum. 64: 541-550. • IF 1.747

Beleggia R., Omranian N., Holtz Y., Gioia T., Fiorani F., Nigro F.M., Pecchioni N., De Vita P., Schurr U., David J., Nikoloski Z., Papa R. (2020)

Comparative analysis based on transcriptomics and metabolomics data reveal differences between emmer and durum wheat in response to nitrogen starvation.

International Journal of Molecular Sciences. 22(9): 4790. • IF 6.2

Belwal T., Singh G., Jeandet P., Pandey A., Giri L., Ramola S., Bhatt I.D., Venskutonis P.R., Georgiev M.I., Clement C., Luo Z. (2020)

Anthocyanins, multi-functional natural products of industrial relevance: recent biotechnological advances

Biotechnology Advances. 43: 107600. • IF 14.227

Breitel D., Brett P., Alseekh S., Fernie A.R., Butelli E. and Martin C. (2020)

Metabolic engineering of tomato fruit enriched in L-DOPA

Metabolic Engineering. 65: 185-196. • IF 9.783

Chen M., Zhang Y., Chen X., Fernie A.R., Liu Y., Zhu F. (2020)

SWATH-MS based proteomics: strategies and applications in plants

Trends in Biotechnology. 39(5): 433-437. • IF 19.536

Chen M., Zhu F., Gao B., Ma K., Zhang Y., Fernie A.R., Chen X., Ye N., Hu Q., Tian Y., Zhang D., Liu T., Zhang J., Liu Y. (2020)

Full-length transcript-based proteogenomics of rice improves its genome and proteome annotation

Plant Physiology. 182(3): 1510-1526. • IF 8.340

Clemente-Moreno M.J., Omranian N.b, Sáez P.d, Figueroa C.M., Del-Saz N., Elso M., Poblete L., Orf I., Cuadros-Inostroza A., Cavieres L., Bravo L., Fernie A.R., Ribas-Carbó, M. Flexas J., Nikoloski Z., Brotman Y., Gago J. (2020)

Cytochrome respiration pathway and sulphur metabolism sustain stress tolerance to low temperature in the Antarctic species Colobanthus quitensis

New Phytologist. 225(2): 754-768. • IF 10.151

Clemente-Moreno M. J., Omranian N., Sáez P. L., Figueroa C. M., Del-Saz N., Elso M., Poblete L., Orf I., Cuadros-Inostroza A., Cavieres L. A., Bravo L., Fernie A.R., Ribas-Carbó, M. Flexas J., Nikoloski Z., Brotman, Y., Gago J. (2020)

Low-temperature tolerance of the Antarctic species Deschampsia antarctica: A complex metabolic response associated with nutrient remobilization.

Plant Cell and Environment. 43(6): 1376 –1393. (7.228)

Correa S.M., Alseekh S., Atehortúa L., Brotman Y., Ríos-Estepa R., Fernie A.R., Nikoloski Z. (2020)

Model-assisted identification of metabolic engineering strategies for Jatropha curcas lipid pathways.

The Plant Journal. 104(1): 76-95. • IF 6.417

Correa S. M., Fernie A.R., Nikoloski Z., Brotman Y. (2020)

Towards model-driven characterization and manipulation of plant lipid metabolism

Progress in Lipid Research. 80: 101051. • IF 16.195

Faisal M., Gechev T., Mueller-Roeber B., Dijkwel P. (2020)

Putative alternative translation start site-encoding nucleotides of CPR5 regulate growth and resistance

BMC Plant Biology 20(1): 295. • IF 4.215

Fernie A.R., Alseekh S. (2020)

Tomato multiomics at aPEELing resolution

Nature Plants. 6: 1394-1395. • IF 15.793

Fernie A.R., Zhang Y., Sampathkumar A. (2020)

Cytoskeleton architecture regulates glycolysis coupling cellular metabolism to mechanical cues trends in biochemical sciences

Trends in Biochemical Science. 45(8): 637-638. • IF 13.807

Gechev T., Georgiev M.I., Fernie A.R. (2020)

PlantaSYST: Teaming-up for systems biology and biotechnology

Trends in Plant Science. 25(7): 621-624. • IF 18.313

Gechev T., Petrov V. (2020)

Reactive oxygen species and abiotic stress in plants

International Journal of Molecular Sciences. 21: 7433. • IF 5.923

Grozeva S., Tringovska I., Nankar A., Todorova V., Kostova D. (2020)

Assessment of fruit quality and fruit morphology in androgenic pepper lines (Capsicum annuum L.).

Crop Breeding Genetics and Genomics. 2(1):e200005.

Grozeva S., Tringovska I., Nankar A., Todorova V., Kostova D. (2020)

Characterization of tomato accessions for morphological, agronomic, fruit quality, and virus resistance traits.

Canadian Journal of Plant Science, 101(4): 476 –489. • IF 1.375

Jiao C., Sørensen I., Sun X., Sun H., Behar H., Alseekh S., Philippe G., Palacio Lopez K., Sun L., Reed R., Jeon S., Kiyonami R., Zhang S., Fernie A.R., Brumer H., Domozych D., Fei Z., Rose J. (2020)

The Penium margaritaceum genome: hallmarks of the origins of land plant

s. Cell. 181: 1097-1111. • IF 41.582

Joshi D.C., Zhang K., Wang C., Chandora R., Khurshid M., Li J., He M., Georgiev M.I., Zhou M. (2020)

Strategic enhancement of genetic gain for nutraceutical development in buckwheat: A Genomics-driven perspective

Biotechnology Advances. 39: 107479. • IF 14.227

Kanojia A., Gupta S., Benina M., Fernie A.R., Mueller-Roeber B., Gechev T., Dijkwel P. (2020)

Developmentally controlled changes during Arabidopsis leaf development indicate causes for loss of stress tolerance with age

Journal of Experimental Botany. 71: 6340 –6354. • IF 6.992

Kerchev P., van der Meer T., Sujeeth S., Verlee A., Stevens C.V., Van Breusegem F., Gechev T. (2020)

Molecular priming as an approach to induce tolerance against abiotic and oxidative stresses in crop plants

Biotechnology Advances. 40: 107503. • IF 14.227

Kuhalskaya A., Wijesingha Ahchige M., Perez de Souza L., Vallarino J., Brotman Y., Alseekh S. (2020)

Network analysis provides insight into tomato lipid metabolism

Metabolites. 10(4):152. • IF 4.932

Li Y., Chen Y., Zhou L., You S., Deng H., Chen Y., Alseekh S., Yuan Y., Fu R., Zhang Z., Su D., Fernie A.R., Yuan Y., Fu R., Zhang Z., Su D. (2020)

Microtom metabolic network: rewiring tomato metabolic regulatory network throughout the growth cycle

Molecular Plant. 13: 1203-1218. • IF 13.164

Lyall R., Gechev T. (2020)

Multi-omics insights into the evolution of angiosperm resurrection plants

Annual Plant Reviews Online. 3(1): 77-110.

Lyall R., Nikoloski Z., Gechev T. (2020)

Comparative analysis of ROS network genes in extremophile eukaryotes

International Journal of Molecular Sciences. 21: 9131. • IF 5.923

Marchev A., Yordanova Z.P., Georgiev M.I. (2020)

Green (cell) factories for advanced production of plant secondary metabolites

Critical Reviews in Biotechnology. 40(4): 443-458. • IF 8.429

Mardanova E.S., Takova K.H., Toneva V., Zahmanova G., Tsybalova L., Ravin N. (2020)

A plant-based transient expression system for the rapid production of highly immunogenic Hepatitis E virus-like particles

Biotechnology Letters. 42(11):2441-2446. • IF 2.461

Nankar A.N., Scott M.P., Pratt R.C. (2020)

Compositional analyses reveal relationships among components of blue maize grains

Plants. 9: 1775. • IF: 3.935

Nankar A.N., Tringovska I., Grozeva S., Ganeva D., Kostova D. (2020)

Tomato phenotypic diversity determined by combined approaches of conventional and high-throughput tomato analyzer phenotyping

Plants. 9: 197. • IF 3.935

Nankar A.N., Todorova V., Tringovska I., Pasev G., Radeva V., Ivanova V., Kostova D. (2020)

A step towards Balkan Capsicum annuum L. core collection: Phenotypic and biochemical characterization of 180 accessions for agronomic, fruit quality, and virus resistance traits

PLoS ONE. 15(8): e0237741. • IF 3.240

Naseri G., Mueller-Roeber B. (2020)

A Step-by-Step Protocol for COMPASS a Synthetic Biology Tool for Combinatorial Gene Assembly.

Methods in Molecular Biology. 2205: 277-303.

Omidbakhshfard M.A., Sujeeth N., Gupta S., Omranian N., Guinan K.J., Brotman Y., Nikoloski Z., Fernie A.R., Mueller-Roeber B., Gechev T. (2020)

A biostimulant obtained from the seaweed Ascophyllum nodosum protects Arabidopsis thaliana from severe oxidative stress

International Journal of Molecular Sciences. 21(2): 1 –26. • IF 5.923

Pasev G., Radeva-Ivanova V., Lyall R., Nankar A.N., Kostova D., Turina M., Vallino M. (2020)

First report of tomato spotted wilt virus on lisianthus (Eustoma grandiflorum) in Bulgaria

Journal of Plant Pathology. 103:375. • IF 1.729

Perez De Souza L., Alseekh S., Brotman Y., Fernie A.R. (2020)

Network-based strategies in metabolomics data analysis and interpretation: from molecular networking to biological interpretation

Expert Review of Proteomics. 17(4): 243-255. • IF 3.940

Salem M.A., Perez de Souza L., Serag A., Fernie A.R., Farag M.A., Ezzat S.M., Alseekh S. (2020)

Metabolomics in the context of plant natural products research: from sample preparation to metabolite analysis

Metabolites. 10: E37. • IF 4.932

Salem, M.A., Radwan, R.A., Mostafa, E.S., Alseekh, S., Fernie, A.R., Ezzat S.M. (2020)

Using an UPLC/MS-based untargeted metabolomics approach for assessing the antioxidant capacity and anti-aging potential of selected herbs

RSC Advances. 10: 31511-31524. • IF 3.361

Salem M., Yoshida T., Perez de Souza L., Alseekh S., Bajdzienko K., Fernie A.R., Giavalisco P. (2020)

An improved extraction method enables the comprehensive analysis of lipids, proteins, metabolites and phytohormones from a single sample of leaf tissue under water-deficit stress

The Plant Journal. 103: 1614-1632. • IF 6.417

Sewelam N., Brilhaus D., Bräutigam A., Alseekh S., Fernie A.R., Maurino V.G. (2020)

Molecular plant responses to combined abiotic stresses put a spotlight on unknown and abundant genes

Journal of Experimental Botany. 71(16): 5098-5112. • IF 6.992

Scossa F., Fernie A.R. (2020)

The evolution of metabolism: how to test evolutionary hypotheses at the genomic level.

Computational and Structural Biotechnology Journal. 18: 482 –500. • IF 7.271

Shapiguzov A., Nikkanen L., Fitzpatrick D., Vainonen J., Gossens R., Alseekh S., Aarabi F., Tiwari A., Blokhina O., Panzarov K., Benedikty Z., Tyystjärvi E., Fernie A.R., Trtílek M., Aro E., Rintamäki E., Kangasjärvi J. (2020)

Dissecting the interaction of photosynthetic electron transfer with mitochondrial signalling and hypoxic response in the arabidopsis rcd1 mutant

Philosophical Transactions of the Royal Society of London B, Biological Sciences. 375(1801):20190413. • IF 6.237

Sieniawska E., Golus J., Sawicki R., Georgiev M.I. (2020)

Untargeted metabolomic exploration of Mycobacterium tuberculosis stress response to cinnamon essential oil

Biomolecules. 10(3): 357. • IF 4.879

Sujeeth N., Mehterov N., Gupta S., Qureshi M.K., Fischer A., Proost S., Omidbakhshfard M.A., Obata T., Benina M., Staykov N., Balazadeh S., Walther D., Fernie A.R., Mueller-Roeber B., Hille J., Gechev T. (2020)

A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana

Cellular and Molecular Life Sciences. 77: 705 –718. • IF 9.261

Suzuki M., Wu S., Mimura M., Alseekh S., Fernie A.R., Hanson A., McCarty D. (2020)

Construction and applications of a B vitamin genetic resource for investigation of vitamin dependent metabolism in maize

The Plant Journal. 101(2), 442 –454. • IF 6.417

Takova K., Koynarski T., Minkov I., Ivanova Z, Toneva V., Zahmanova G. (2020)

Hepatitis E Virus seroprevalence in domestic pigs and wild boar in Bulgaria.

Animals (Basel). 10(9) :1521. • IF 2.752

Tohge T., Scossa F., Wendenburg R., Frasse P., Balbo I., Watanabe M., Alseekh S., Jadhav S., Delfin J., Lohse M., Giavalisco P., Usadel B., Zhang Y., Luo J., Bouzayen M., Fernie A.R. (2020)

Exploiting the natural variation in tomato to define pathway structure and metabolic regulation of fruit polyphenolics in the lycopersicum complex

Molecular Plant. 13(7):1027-1046. • IF 13.164

Toleco M.R., Naake T., Zhang Y., Heazlewood J.L., Fernie A.R. (2020)

Plant mitochondrial carriers: molecular gatekeepers that help to regulate plant central carbon metabolism

Plants (Basel). 9(1). pii: E117. • IF 3.935

Tong H., Küken A., Nikoloski Z. (2020)

Integrating molecular markers into metabolic models improves genomic selection for Arabidopsis growth

Nature Communications 11: 2410. • IF 14.919

Vasileva L., Savova M., Amirova K., Balcheva-Sivenova Zh., Ferrante C., Orlando G., Wabitsch M. , Georgiev M.I. (2020)

Caffeic and chlorogenic acids synergistically activate browning program in human adipocytes: implications of AMPK and PPAR-mediated pathways

International Journal of Molecular Sciences. 21(24): 9740. • IF 5.924

Vasileva L., Savova M., Amirova K., Dinkova-Kostova A., Georgiev M.I. (2020)

Obesity and NRF2-mediated cytoprotection: where is the missing link?

Pharmacological Research. 156: 104760. • IF 7.658

Wen W., Alseekh S., Fernie A.R. (2020)

Conservation and diversification of flavonoid metabolism in the plant kingdom

Current Opinion in Plant Biology. 55: 100-108. • IF 7.834

Wu L., Georgiev M.I., Cao H., Nahar L., El-Seedi H.R., Sarker S.D., Xiao J., Lu B. (2020)

Therapeutic potential of phenylethanoid glycosides: a systematic review

Medicinal Research Reviews. 40(6): 2605-2649. • IF 12.994

Wu S., Alseekh S., Brotman Y., Fernie A.R. (2020)

Metabolomic analysis of natural variation in Arabidopsis.

Methods in Molecular Biology. 2200: 393-411.

Zahmanova G., Mazalovska M., Takova K.H.,Toneva V., Minkov I.N., Mardanova E.S., Ravin N.V., Lomonossoff G.P. (2020)

Rapid high-yield transient expression of swine Hepatitis E ORF2 capsid proteins in Nicotiana benthamiana plants and production of chimeric Hepatitis E virus-like particles bearing the M2e influenza epitope

Plants. 9(1): 29. • IF 3.935

Zhang W., Alseekh S., Zhu X., Zhang Q., Fernie A.R., Kuang H., Wen W. (2020)

Dissection of the domestication-shaped genetic architecture of lettuce primary metabolism

The Plant Journal. 104(3): 613-630. • IF 6.417

Zhang W., Zhang Y., Qiu H., Guo Y., Wan H., Zhang X., Scossa F., Alseekh S., Zhang Q., Wang P., Xu L., Schmidt M., Jia X., Li D., Zhu A., Guo F., Chen W., Ni D., Usadel B., Fernie A.R., Wen W. (2020)

Genome assembly of wild tea tree DASZ reveals pedigree and selection history of tea varieties

Nature Communications. 11 (1):3719. • IF 14.919

Zhang Y., Chen M., Toleco M.R., Jing Y., Strotmann V., Zhang J., Stahl Y., Fernie A.R. (2020)

A high efficiency method for Agrobacterium tumefaciens mediated transient transformation of plants with utility for high throughput screening of protein-protein interactions

Plant Communication. 1(5): 100028.

Zhang Y., Fernie A.R. (2020)

Metabolons, enzyme-enzyme assemblies that mediate substrate channeling, and their roles in plant metabolism

Plant communication. 100081

Zhang Y., Fernie A.R. (2020)

On the detection and functional significance of the protein – protein interactions of mitochondrial transport proteins

Biomolecules. 10 (8):e1107. • IF 4.879

Zhang Y., Fernie A.R. (2020)

Resolving the metabolon: is the proof in the metabolite?

EMBO Reports. 21: e50774. • IF 8.807

Zhang Y., Krahner I., Bolze A., Gibon Y., Fernie A.R. (2020)

Adenine nucleotide and nicotinamide adenine dinucleotide measurements in plants

Current Protocols in Plant Biology. 5(3):e20115.

Zhang Y., Sampathkumar A., Kerbler S., Swart C., Seerangan K., Graf A., Fernie A.R. (2020)

A novel glycolytic metabolon mediate the interaction between the mitochondria and chloroplast

Nature Communications. 11: 4509. • IF 14.919

Zhang Y., Sampathkumar A., Swart C., Graf A., Fernie A.R. (2020)

A moonlighting role for enzymes of glycolysis in the co-localization of mitochondria and chloroplasts

Nature Communications. 11(1): 1-15. • IF 14.919

Zhang Y., Skirycz A., Fernie A.R. (2020)

An abundance and interaction encyclopedia of plant protein function

Trends in Plant Science. 25(7):627-630. • IF 18.313

Zhang Y., Natale R., Domingues A.P. Júnior, Toleco M.R., Siemiatkowska B., Fàbregas N., Fernie A.R. (2020)

Rapid identification of protein-protein interactions in plants

Current Protocols in Plant Biology. 4(4): e20099.

Zhu J., Lau K., Puschmann R., Harmel R.K., Zhang Y., Pries V., Gaugler Ph., Broger L., Dutta A.K., Jessen H., Schaaf G., Fernie A.R., Hothorn L.A., Fiedler D., Hothorn M. (2019)

Two bifunctional inositol pyrophosphate kinases/phosphatases control plant phosphate homeostasis

eLife. 2019;8:e43582. • IF 8.140

Zhu J., Loubéry S., Broger L., Zhang Y., Lorenzo-Orts L., Utz-Pugin A., Fernie A.R., YoungTae C., Hothorn M. (2020)

A genetically validated approach to detect inorganic polyphosphates in plants

The Plant Journal. 102(3): 507-516. • IF 6.417

2019

Amirova K., Dimitrova P., Marchev A.S., Aneva I.Y., Georgiev M.I. (2019)

Clinopodium vulgare L. (wild basil) extract and its active constituents modulate cyclooxygenase-2 expression in neutrophils

Food and Chemical Toxicology. 124: 1 –9. • IF 3.775

Boguslawska J., Poplawski P., Alseekh S., Koblowska M., Iwanicka-Nowicka R., Rybicka B., Kedzierska H., Gluchowska K., Hanusek K., Tanski Z., Fernie A.R., Piekielko-Witkowska A., (2019)

MicroRNA-mediated metabolic reprograming in renal cancer

Cancers. 11: 1825. • IF 6.162

Brog Y., Osorio S., Yichie Y., Alseekh S., Bensal E., Kochevenko A., Zamir D., Fernie A.R. (2019)

A Solanum neorickii introgression population providing a powerful complement to the extensively characterized Solanum pennellii population

Plant Journal. 97(2): 391 –403. • IF 5.726

Chen C., Zhang K., Khurshid M., Li J., He M., Georgiev M.I. , Zhang X. & Zhou M. (2019)

MYB transcription repressors regulate plant secondary metabolism

Critical Reviews in Plant Sciences. 38: 159-170. • IF 4.189

Denev P., Todorova V., Ognyanov M., Georgiev Y., Yanakieva I., Tringovska I., Grozeva S., Kostova D. (2019)

Phytochemical composition and antioxidant activity of 63 Balkan pepper (Capsicum annuum L.) accessions

Journal of Food Measurement and Characterization. 13: 2510 – 2520. • IF 1.415

De Smet B., Willems P., Fernandez-Fernandez A., Alseekh S., Fernie A.R., Messens J., Van Breusegem F. (2019)

In vivo detection of protein cysteine sulfenylation in plastids

Plant Journal. 97(4): 765 –778. • IF 5.726

Dong Y., Gupta S., Sievers R., Wargent J., Wheeler D., Putterill J., Macknight R., Gechev T., Mueller-Roeber B., Dijkwel P. (2019)

Genome draft of the Arabidopsis relative Pachycladon cheesemanii reveals novel strategies to tolerate New Zealand’s high ultraviolet B radiation environment.

BMC Genomics. 20(1): 838. • IF 3.594

Fang C., Fernie A.R., Luo J. (2019)

Exploring the diversity of plant metabolism

Trends in Plant Science. 24(1): 83 –98. • IF 14.006

Fort A., Lebrault M., Allaire M., Esteves-Ferreira A., McHale M., Lopez F., Farinas Franco J., Alseekh S., Fernie A.R., Sulpice R. (2019)

Extensive variations in diurnal growth patterns and metabolism amongst Ulva spp strains

Plant Physiology. 180(1): 109 –123. • IF 6.305

Gupta S., Dong Y., Dijkwel P., Mueller-Roeber B., Gechev T. (2019)

Genome-wide analysis of ROS antioxidant genes in resurrection species suggest an involvement of distinct ROS detoxification systems during desiccation

International Journal of Molecular Sciences. 20(12): 3101. • IF 4.556

Li K., Wen W., Alseekh S., Yang X., Guo H., Li W., Wang L., Pan Q., Zhan W., Liu J., Li Y., Wu X., Brotman Y., Willmitzer L., Li J., Fernie A.R., Yan J. (2019)

Large-scale metabolite quantitative trait locus analysis provides new insights for high-quality maize improvement

Plant Journal. 99: 216-230. • IF 5.726

Liu T., Chen M., Zhang Y., Liu Y., Zhu F., Tian Y., Fernie A.R., Ye N., Zhang J. (2019)

Comparative metabolite profiling of two switchgrass ecotype varieties reveals differences in drought stress responses and rhizosheath size

Planta. 250: 1355 –1369. • IF 3.060

Llorente C., Jimenez R., Jackie, Brotman Y., Fernie A.R., Sreenivasulu N. (2019)

Rice grain quality benchmarking through profiling of volatiles and metabolites in grains using gas chromatography mass spectrometry

Methods in Molecular Biology. 1892: 187 –199. • IF 10.71

Nankar A., Tringovska I., Grozeva S., Todorova V., Kostova D. (2019)

Application of high-throughput phenotyping tool tomato analyzer to characterize Balkan Capsicum fruit diversity

Scientia Horticulturae. 260. • IF 1.961

Naseri G., Behrend J., Rieper L., Mueller-Roeber B. (2019)

COMPASS for rapid combinatorial optimization of biochemical pathways based on artificial transcription factors

Nature Communications. 10(1): 2615. • IF 11.878

Pandey P.K., Yu J., Omranian N., Alseekh S., Vaid N, Fernie A.R., Nikoloski Z., Laitinen R.A.E. (2019)

Plasticity in metabolism underpins local responses to nitrogen in Arabidopsis thaliana populations

Plant Direct. 3(11): e00186. • IF 1.725

Perez de Souza L., Alseekh S., Naake T., Fernie A.R. (2019)

Mass spectrometry-based untargeted plant metabolomics

Current Protocols in Plant Biology. 4: e20100.

Nunes-Nesi A., Alseekh S., de Oliveira Silva F., Omranian N., Lichtenstein G., Mirnezhad M., Gonzalez R., Sabio Y Garcia J., Conte M., Leiss K., Klinkhamer P., Nikoloski Z., Carrari F., Fernie A.R. (2019)

Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds

Metabolomics. 15(4): 46. • IF 3.167

Reinholdt 0., Schwab S., Zhang Y., Reichheld J., Fernie A.R., Hagemann M., Timm S. (2019)

Redox-regulation of photorespiration through mitochondrial thioredoxin o1

Plant Physiology. 181(2): 442-457. • IF 8.340

Scossa F., Roda F., Tohge T., Georgiev M. I. and Fernie A.R. (2019)

The hot and the colorful: understanding the metabolism, genetics and evolution of consumer preferred metabolic traits in pepper and related species

Critical Reviews in Plant Sciences. 38(5-6): 339-381. • IF 4.189

Shapiguzov A., Vainonen J., Hunter K., Tossavainen H., Tiwari A., Jarvi S., Hellman M., Aarabi F., Alseekh S., Wybouw B., Van Der Kelen K., Nikkanen L., Krasensky-Wrzaczek J., Sipari N., Keinanen M., Tyystjarvi E., Rintamaki E., De Rybel B., Salojarvi J., Van Breusegem F., Fernie A.R., Brosche M., Permi P., Aro E., Wrzaczek M., Kangasjarvi J. (2019)

Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors

eLife. 8: e43284. • IF 7.551

Vasileva L., Ivanovska M., Murdjeva M., Saracheva K., Georgiev M. (2019)

Immunoregulatory natural compounds in stress-induced depression: An alternative or an adjunct to conventional antidepressant therapy?

Food and Chemical Toxicology. 127: 81 –88. • IF 3.775

Wang S., Alseekh S., Fernie A.R., Jie Luo J. (2019)

The structure and function of major plant metabolite modifications

Molecular Plant. 12(7): 899-919. • IF 10.812

2018

Alseekh S., Bermudez L., de Haro L., Fernie A.R., Carrari F. (2018)

Crop metabolomics: from diagnostics to assisted breeding

Metabolomics. 14(11): 148. • IF 3.167

Alseekh S., Fernie A.R. (2018)

Metabolomics 20 years on: what have we learned and what hurdles remain?

Plant Journal. 94(6): 933 –942. • IF 5.726

Alseekh S., Wu S., Brotman Y., Fernie A.R. (2018)

Guidelines for sample normalization to minimize batch variation for large-scale metabolic profiling of plant natural genetic variance

Methods in Molecular Biology. 1778: 33 –46. • IF 10.71

Chen J., Wang J., Chen W., Sun W., Peng M., Yuan Z., Shen S., Xie K., Jin C., Sun Y., Liu X., Fernie A.R., Yu S., Luo J. (2018)

Metabolome analysis of multi-connected biparental chromosome segment substitution line populations

Plant Physiology. 178(2): 612 –625. • IF 6.305

Chen, L., Teng, H., Xie, Z., Cao, H., Cheang, W. S., Skalicka-Woniak, K., Georgiev,M., Xiao, J. (2018)

Modifications of dietary flavonoids towards improved bioactivity: an update on structure –activity relationship

Critical Reviews in Food Science and Nutrition. 58(4): 513 –527. • IF 6.704

Durgud M., Gupta S., Ivanov I., Omidbakhshfard A., Benina M., Alseekh A., Staykov N., Hauenstein M., Dijkwel P.P., Hörtensteiner S., Toneva V., Brotman Y., Fernie A.R., Mueller-Roeber B., Gechev T. (2018)

Molecular mechanisms preventing senescence in response to prolonged darkness in a desiccation –tolerant plant

Plant Physiology. 177(3): 1319 –1338. • IF 6.305

Fernie A.R., Alseekh S. (2018)

Defining the convergence of ethylene and auxin signaling in tomato

New Phytologist. 219(2): 479-481. • IF 7.299

Garbowicz K., Liu Z., Alseekh S., Tieman D., Taylor M., Kuhalskaya A., Ofner I., Zamir D., Klee H., Fernie A.R., Brotman Y. (2018)

Quantitative trait loci analysis identifies a prominent gene involved in the production of fatty acid-derived flavor volatiles in tomato

Molecular Plant. 11(9): 1147 –1165. • IF 10.812

Kong F., Burlacot A., Liang Y., Legeret B., Alseekh S., Brotman Y., Fernie A.R., Krieger-Liszkay A., Beisson F., Peltier G., Li-Beisson Y. (2018)

Interorganelle communication: Peroxisomal MALATE DEHYDROGENASE2 connects lipid catabolism to photosynthesis through redox coupling in Chlamydomonas

Plant Cell. 30(8): 1824 –1847. • IF 8.228

Kopka J., Fernie A.R. (2018)

Editorial overview: plant synthetic and systems biology.

Current Opinion in Biotechnology. 49: viii –xi. • IF 8.083

Ma X., Zhang, Y., Tureckova V., Xue G.-P., Fernie A.R., Mueller-Roeber B., Balazadeh, S. (2018)

NAC transcription factor SlNAP2 in tomato regulates leaf senescence and fruit yield

Plant physiology. 177(3): 1286 –1302. • IF 6.305

Minkov G., Toneva V., Ivanova Z., Baev V. (2018)

LoopRNA – java Module for RNA structure annotation

Comptes Rendus de l’Académie Bulgare des Sciences. 71(9): 1215-1221. • IF 0.23

Omidbakhshfard M., Fujikura U., Olas J., Xue G., Balazadeh S., Mueller-Roeber B. (2018)

GROWTH-REGULATING FACTOR 9 negatively regulates arabidopsis leaf growth by controlling ORG3 and restricting cell proliferation in leaf primordia

PLOS Genetics. 14(7): e1007484. • IF 5.540

Petrov V., Qureshi, M. K., Hille, J., Gechev T. (2018)

Occurrence, biochemistry and biological effects of host-selective plant mycotoxins

Food and Chemical Toxicology. 112: 251 –264. • IF 3.775

Scossa F., Benina M., Alseekh S., Zhang Y. and Fernie A.R. (2018)

The integration of metabolomics and next-generation sequencing data to elucidate the pathways of natural product metabolism in medicinal plants

Planta Medica. 84(12/13): 855 –873. • IF 2.746

Schwahn K., Nikoloski Z. (2018)

Data reduction approaches for dissecting transcriptional effects on metabolism

Frontiers in Plant Science. 9: 538. • IF 3.678

Vasileva L., Marchev A., Georgiev M. (2018)

Causes and solutions to “globesity”: the new fa(s)t alarming global epidemic

Food and Chemical Toxicology. 121: 177 –193. • IF 3.775

Vasileva L., Saracheva K., Ivanovska M.,Petrova A., Marchev A., Georgiev M., Murdjeva M., Getova D. (2018)

Antidepressant-like effect of salidroside and curcumin on the immunoreactivity of rats subjected to a chronic mild stress model

Food and Chemical Toxicology. 121: 604 –611. • IF 3.775

Zhang K., Logacheva M. D., Meng Y., Hu J., Wan D., Li L., Janovska D., Zhiyong W., Georgiev M.I., Zhou, M. (2018)

Jasmonate-responsive MYB factors spatially repress rutin biosynthesis in Fagopyrum tataricum

Journal of Experimental Botany. 69(8): 1955 –1966. • IF 5.360

Zhang Y. , Zhang Y., McFarlane H., Obata T., Richter A., Lohse M., Grimm B., Persson S., Fernie A.R., Giavalisco P. (2018)

Inhibition of TOR represses nutrient consumption, which improves greening after extended periods of etiolation

Plant Physiology. 178(1): 101 –117. • IF 6.305

Zhang Y. , Fernie A.R. (2018)

On the role of the tricarboxylic acid cycle in plant productivity

Journal of Integrative Plant Biology. 60(12): 1199 –1216. • IF 3.824

Zhu G., Wang S., Huang Z., Zhang S., Liao Q., Zhang C., Lin T., Qin M., Peng M., Yang C., Cao X., Han X., Wang X., Van Der Knaap, E. Zhang, Z., Cui X., Klee H., Fernie A.R., Luo, J., Huang, S. (2018)

Rewiring of the fruit metabolome in tomato breeding

Cell. 172(1): 249 –261. • IF 36.216

2017

Braicu C., Mehterov N., Vladimirov B., Sarafian V., Nabavi S. M., Atanasov A. G., & Berindan-Neagoe I. (2017)

Nutrigenomics in cancer: revisiting the effects of natural compounds

Seminars in Cancer Biology. 46: 84 –106. • IF 10.198

Gulei D., Mehterov N., Nabavi S. M., Atanasov A.G., Berindan-Neagoe I. (2017)

Targeting ncRNAs by plant secondary metabolites: the ncRNAs game in the balance towards malignancy inhibition

Biotechnology Advances. 36(6): 1779 –1799. • IF 11.452

Schwahn K., Beleggia R., Omranian N., Nikoloski Z. (2017)

Stoichiometric correlation analysis: principles of metabolic functionality from metabolomics data

Frontiers in Plant Science. 8: 2152. • IF 3.678

Tohge T., Fernie A.R. (2017)

An overview of compounds derived from the shikimate and phenylpropanoid pathways and their medicinal importance

Mini-Reviews in Medicinal Chemistry. 17(12): 1013-1027. • IF 2.645

Georgiev M.I. (2016)

From plants to pharmacy shelf: natural products revival

Phytochemistry Reviews. 15(4): 511 –513. • IF 3.393

Marchev A., Dinkova-Kostova A., György Z., Mirmazloum I., Aneva I., Georgiev M.I. (2016)

Rhodiola rosea L.: from golden root to green cell factories

Phytochemistry Reviews. 15(4): 515 –536. • IF 3.393

Messerschmidt K., Hochrein L., Dehm D., Schulz, K., Mueller-Roeber, B. (2016)

Characterizing seamless ligation cloning extract for synthetic biological applications

Analytical biochemistry. 509: 24 –32. • IF 2.334

Tohge T., Wendenburg R., Ishihara, H., Nakabayashi R., Watanabe M., Sulpice R., Fernie, A.R.. (2016)

Characterization of a recently evolved flavonol-phenylacyltransferase gene provides signatures of natural light selection in Brassicaceae

Nature Communications. 7: 1 –11. • IF 12.124

Books and book chapters

Yordanova, Z., Georgiev M.I. (2017)

Cell factories. In B. Thomas, B. G. Murray, & D. J. Murphy (Eds.). Encyclopedia of Applied Plant Sciences (Second Edition). (pp. 72 –76). Oxford: Academic Press.

English

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