Written by Ivan Dulgerov

Plant Metabolomics

Metabolites play a central role not only for plant growth and the response of plants to environmental stresses, but have a particularly important role also for formation of flavour, taste and texture, i.e. features highly relevant for vegetable crops and their performance on the market. The department focuses on unravelling the metabolic profiles and primary/secondary metabolite pathways (and their regulatory control) in harvestable organs (e.g., fruits) of vegetable crops by employing cutting-edge mass spectrometry methods.

Head of Department: Email
Prof. Dr. Alisdair Fernie fernie@cpsbb.eu
Postdoctoral Researchers: Email
Dr. Dimitre Ivanov d.ivanov@cpsbb.eu
Alumni: Email
Dr. Maria Benina benina@cpsbb.eu

 

Publications:

2026
Baccolini C., Ishihara H., Feil R., Perez de Souza L., Alseekh S., Walther D., Fernie A.R., Stitt M., Lunn J.E., Arrivault S. (2026)
Exploring the diversity of the CO2-concentrating mechanism (CCM) in different C4 subtypes.
Journal of Experimental Botany. erag116. • IF 6.5
Cocozza A., Venezia A., di Cesare C., Fernie A.R., Alseekh S., Tripodi P. (2026)
Dissecting the genetic architecture and plasticity of the fruit primary metabolome in a Solanum habrochaites introgression library under contrasting nutrient regimes.
Journal of Plant Physiology. 325: 154848. • IF 4.8
Dong J., Zhang L., Ouyang Q., Zhang F., Zheng W., Ferinie A.R., Song Y., Zhou K., Zhu Z., Yu Y. (2026)
Abscisic acid alleviates cadmium toxicity in oilseed rape plants by regulating its accumulation, subcellular distribution, and ascorbate-glutathione cycle.
Environmental and Experimental Botany. 244: 106354. • IF 4.7
Górna J., Perlikowski D., Alseekh S., Rapacz M., Fernie A.R., Wójcik-Jagła M., Kosmala A. (2026)
Remodeling of leaf lipidome during cold acclimation, de-acclimation, and re-acclimation influences frost tolerance of Festuca arundinacea.
Plant and Cell Physiology. 67(9): 1533–1556. • IF 4.7
Ibrahim R.M., Sedeek M.S., Li Z., Alseekh S., Fernie A.R., Farag M.A. (2026)
Impacts of cultivar, tissue type, and processing methods on sweet potato metabolome and antioxidant activity: integrating UHPLC-MS/MS, molecular networking, UV-Vis spectroscopy, and in vitro assays.
Food Chemistry. 524: 150170. • IF 10.4
Jin M., Yan S., Wu Y., Zhai Z., Alseekh S., Chen Y., Huang W., Ma N., Tao K., Xiao K., Zhu Y., Yu Y., Shao Y., Jiang C., Liu X., Sun J., Qu Y., Wei W., Li W., Xu J., Luo J., Wang X., Zhuo L., Zhan J., Qiu F., Yang N., Xiao Y., Liu H.J., Fernie A.R., Yan J. (2026)
Multiomics analysis of primary metabolism reveals the genetic basis of nitrogen partitioning modulated by ZmAVT1A-1 in maize.
Nature Genetics. doi: 10.1038/s41588-026-02655-2. • IF 25.5
Martínez Rivas F.J., Smith M.A., Zangishei Z., Alseekh S., Usadel B., Plaxton W.C., Fernie A.R. (2026)
Malate matters: disrupting bacterial-type phosphoenolpyruvate carboxylase (BTPC) rewires tomato fruit development.
Plant Physiology. DOI: 10.1093/plphys/kiag026. • IF 6.9
Sierra G.P., Orejuela A., Orozco C.I., Pérez-Mesa P.A., Alseekh S., Fernandez-Hilario R., Fernández-Alonso J.L., Smith S.D., Fernie A.R., Roda F. (2026)
A new arborescent genus of Datureae (Solanaceae) from Colombia and Peru, with implications for alkaloid evolution.
Taxon. 75(2): e70130. • IF 3.4
Perez S., Alseekh S., Rojas Contreras S., Deanna R., Smith S.D., Knoch E., Fernie A.R., Roda F. (2026)
Evolution of withanolide biosynthesis in nightshades.
Taxon. 75(4): e70191. • IF 1.9
Tiozon R.J.N., Fernie A.R., Sreenivasulu N. (2026)
Reconfiguring biofortification strategies to transform food systems and address micronutrient deficiency of the 21st century.
Journal of Integrative Plant Biology. doi: 10.1111/jipb.70305. • IF 12.5
Vallarino J.G., Rosado-Souza L., Zhang Y., Ratcliffe R.G., Sweetlove L.J., Shameer S., Fernie A.R. (2026)
Mitochondrial glutamine synthetase overexpression in tomato source leaves increases assimilate export and fruit yield.
The Plant Cell. koag181. doi: 10.1093/plcell/koag181. • IF 13.5
von Steimker J., Bulut M., Pozhvanov G., Bergmann S., Wendenburg R., Sun Y., Zhu F., Pieri A., Frascarelli G., Nanni L., Bellucci E., Bitocchi E., Papa R., Fernie A.R., Alseekh S. (2026)
GWAS identifies regulators of seed and leaf morphology in common bean, revealing OFP5 as a major seed size determinant.
The Plant Journal. 126(3): e70909. • IF 5.7
von Steimker J., Macho M., Wendenburg R., Lee J., Zemach I., Xu Y., Frohlich A., Sampathkumar A., Zamir D., Fei Z., Giovannoni J.J., Fernie A.R., Alseekh S. (2026)
Natural variation in SlGRF10 reveals a role in regulating tomato fruit weight.
Plant Physiology. 201(3): kiag465. • IF 8.2
von Steimker J., Rey E.L., Stanschewski C., Wendenburg R., Klemmer A., Macho M., Thirumalaikumar V.P., Saber N.O., Skirycz A., Fernie A.R., Tester M., Alseekh S. (2026)
Multi-tissue metabolic GWAS and drought-responsive multi-omics reveal the genetic basis of the quinoa metabolome.
Advanced Science. e76426. • IF 14.1
2025
Alseekh S., Klemmer A., Yan J., Guo T., Fernie A.R. (2025)
Embracing plant plasticity or robustness as a means of ensuring food security.
Nature Communications. 6(1): 461. • IF 14.7
Bouzid M., Balparda M., Kerim A., Fu Y., Alvarez C.E., Alseekh S., Fernie A.R., Maurino V.G. (2025)
Natural variation in Arabidopsis thaliana highlights a key role of glyoxalase I;2 in detoxifying glucose-derived reactive carbonyl species.
BMC Plant Biology. 25(1): 1288. • IF 4.8
Dao O., Bertrand M., Alseekh S., Veillet F., Auroy P., Nguyen P.C., Légeret B., Epting V., Morin A., Cuiné S., Monteil C.L., Mackinder L.C.M., Burlacot A., Krieger-Liszkay A., Weber A.P.M., Fernie A.R., Peltier G., Li-Beisson Y. (2025)
The green algae CO2 concentrating mechanism and photorespiration jointly operate during acclimation to low CO2.
Nature Communications. 16(1) :5296. • IF 14.7
Jahan T., Huda M.N., Zhang K., He Y., Lai D., Dhami N., Quinet M., Ali M.A., Kreft I., Woo SH., Georgiev M.I., Fernie A.R., Zhou M. (2025)
Plant secondary metabolites against biotic stresses for sustainable crop protection.
Biotechnology Advances. 79: 108520. • IF 12.1
López C.M., Alseekh S., Martínez Rivas F.J., Fernie A.R., Prieto P., Alamillo J.M. (2025)
CRISPR/Cas9 editing of two adenine phosphoribosyl transferase coding genes reveals the functional specialization of adenine salvage proteins in common bean.
Journal of Experimental Botany. 76(2) :346-362. • IF 6.5
López-Tubau J.M., Laibach N., Burciaga-Monge A., Alseekh S., Deng C., Fernie A.R., Altabella T., Ferrer A. (2025)
Differential impact of impaired steryl ester biosynthesis on the metabolome of tomato fruits and seeds.
Physiologia Plantarum. 177(1): e70022. • IF 3.6
Lu X., He Y., Weng W., Liu Z., Gao Y., Shi Y., Li W., Lai D., Zhao M., Jha R., Zhao H., Li G., Guan C., Shao S., Ruan J., Woo S.H., Ouyang Y., Quinet M., Georgiev M.I., Fernie A.R., Hou C., Zhang K., Liu X., Zhou M. (2025)
Domestication of tartary buckwheat shaped a regulatory module for seedling salt tolerance by targeting the magnesium transporter gene FtMGT2.
Advanced Science. DOI: https://doi.org/10.1002/advs.202511570. • IF 14.1
Nejamkin A., Decima C., Zhang Y., Luquet M., Galatro A., Del Castello F., Massa G.A., Feingold S., Fernie A.R., Lamattina L., Correa‑Aragunde N., Foresi N. (2025)
Metabolic profiling reveals increased nitrogen remobilization in potato plants that express a cyanobacterial NO/NO₃⁻producing enzyme.
Journal of Plant Growth Regulation. doi:10.1007/s00344-025-11740-5. • IF 4.4
Priego-Cubero S., Knoch E., Wang Z., Alseekh S., Braun K.H., Chapman P., Fernie A.R., Liu C., Becker C. (2025)
Subfunctionalization and epigenetic regulation of a biosynthetic gene cluster in Solanaceae.
Proceedings of the National Academy of Sciences. 122(8): e2420164122. • IF 9.4
Rabas A., Colo A., Kaberi K., Ivanov D.A., Bernards M.A. (2025)
The properties of ginsenosides in ginseng garden soil: accumulation, persistence and behaviour.
Plant Soil. 511(1-2): 855-866. • IF 4.1
Tiozon R.N., Pasion-Uy E., Alseekh S., Sartagoda K.J.D., Gempesaw S., Tolentino J.H.G., Fernie A.R., Sreenivasulu N. (2025)
Lipidomics-based association study reveals genomic signatures of anti-cancer qualities of pigmented rice sprouts.
Frontiers in Plant Science. 16: 1533442. • IF 5.9
Torralbo F., López C.M., Alseekh S., Martínez-Rivas F.J., Reyes M.R., Fernie A.R., Alamillo J.M. (2025)
The source of nitrogen conditions transcriptomic responses to water deficit in common bean roots.
Plant Physiology and Biochemistry. 228: 110264. • IF 5.7
Sacharowski S.P., Kubala S., Cwiek P., Steciuk J., Gratkowska-Zmuda D., Oksinska P., Bucior E., Rolicka A.T., Ciesla M., Nowicka K., Alseekh S., Tohge T., Giavalisco P, Zugaj D.L., Stolze S.C., Harzen A., Franzen R., Huettel B., Grzesiuk E., Hajirezaei M.R., Nakagami H., Koncz C., Fernie A.R., Sarnowski T.J. (2025)
BAF60/SWP73 subunits define subclasses of SWI/SNF chromatin remodelling complexes in Arabidopsis.
New Phytologist. DOI: 10.1111/nph.70182. • IF 8.3
Steimker J., Wendenburg R., Klemmer A., Rosaria M., Fernie A.R., Alseekh S., Tripodi P. (2025)
Genome-wide association analysis and linkage mapping decipher the genetic control of primary metabolites and quality traits in Capsicum
The Plant Journal. 122(6): e70300. • IF 5.7
Zhang J., Alseekh S., Fernie A.R., Qian D., Huang L. (2025)
Chemical characterization of lipids provides new Insights into goji berry metabolism.
ACS Food Science and Technology. 5(2): 761 – 769. • IF 2.6
2024
Bortlik J., Lühle J., Alseekh S., Weiste C., Fernie A.R., Dröge-Laser W., Börnke F. (2024)
DOMAIN OF UNKNOWN FUNCTION581-9 negatively regulates SnRK1 kinase activity.
Plant Physiology. 194(3): 1853-1869. • IF 8.005
Gupta S., Petrov V., Garg V., Mueller-Roeber B., Fernie A.R., Nikoloski Z., Gechev T. (2024)
The genome of Haberlea rhodopensis provides insights into the mechanisms for tolerance to multiple extreme environments.
Cellular and Mоlecular Life Sciences. 81(1): 117. • IF 8
Dorrell R.G, Zhang Y., Liang Y., Gueguen N., Nonoyama T., Croteau D. Penot M., Adiba S., Bailleul B., Gros V., Pierella Karlusich J.J, Zweig N., Fernie A.R., Jouhet J., Maréchal E., Bowler C. (2024)
Complementary environmental analysis and functional characterization of lower glycolysis-gluconeogenesis in the diatom plastid.
The Plant Cell. DOI: doi: 10.1093/plcell/koae168 • IF 10.0
John A., Krämer M., Lehmann M., Kunz H.H., Aarabi .F, Alseekh S., Fernie A.R., Sommer F., Schroda M., Zimmer D., Mühlhaus T., Peisker H., Gutbrod K., Dörmann P., Neunzig J., Philippar K., Neuhaus H.E. (2024)
Degradation of FATTY ACID EXPORT PROTEIN1 by RHOMBOID-LIKE PROTEASE11 contributes to cold tolerance in Arabidopsis.
The Plant Cell. 36(5): 1937-1962. • IF 10.0
Qu Y., Fernie A.R., Liu J., Yan J. (2024)
Doubled haploid technology and synthetic apomixis: recent advances and applications in future crop breeding.
Molecular Plant. DOI: 10.1016/j.molp.2024.06.005. • IF 27.5
Stavrakeva K., Metodieva K., Benina M., Bivolarska A., Dimov I., Choneva M., Kokova V., Alseekh S., Ivanova V., Vatov E., Gechev T., Mladenova T., Mladenov R., Todorov K., Stoyanov P., Gyuzeleva D., Popova M., Apostolova E. (2024)
Metabolic composition of methanolic extract of the Balkan endemic species Micromeria frivaldszkyana (Degen) Velen and Its anti-inflammatory effect on male wistar rats.
International Journal of Molecular Sciences. 25(10): 5396. • IF 5.6
Timm S., Klaas N., Niemann J., Jahnke K., Alseekh S., Zhang Y., Souza P.L., Hou L.Y., Cosse M., Selinski J., Geigenberger P., Daloso D.M., Fernie A.R., Hagemann M. (2024)
Thioredoxins o1 and h2 jointly adjust mitochondrial dihydrolipoamide dehydrogenase-dependent pathways towards changing environments.
Plant, Cell & Environment. DOI: doi: 10.1111/pce.14899. • IF 7.947
Yu Y., Alseekh S., Zhu Z., Zhou K., Fernie A.R. (2024)
Multiomics and biotechnologies for understanding and influencing cadmium accumulation and stress response in plants.
Plant Biotechnolgy Journal. DOI: doi: 10.1111/pbi.14379. • IF 13.8
2023
Alseekh S., Fernie A.R. (2023)
Expanding our coverage: Strategies to detect a greater range of metabolites.
Current Opinion in Plant Biology. 73: 102335. • IF 9.396
Alseekh S., Karakas E., Zhu F., Wijesingha Ahchige M., Fernie A.R. (2023)
Plant biochemical genetics in the multiomics era.
Journal of Experimental Botany. DOI: doi: 10.1093/jxb/erad177. • IF 7.298
Balparda M., Schmitz J., Duemmel M., Wuthenow I.C., Schmidt M., Alseekh S., Fernie A.R., Lercher M.J., Maurino V.G. (2023)
Viridiplantae-specific GLXI and GLXII isoforms co-evolved and detoxify glucosone in planta.
Plant Physiology. 191(2): 1214-1233. • IF 8.005
Bulut M., Alseekh S., Fernie A.R. (2023)
Natural variation of respiration-related traits in plants.
Plant Physiology. 191(4): 2120-2132. • IF 8.005
Chen Y., Wang Y., Liang X., Zhang Y., Fernie A.R. (2023)
Mass spectrometric exploration of phytohormone profiles and signaling networks.
Trends in Plant Science. 28(4): 399-414. • IF 22.012
Dahmani I., Qin K., Zhang Y., Fernie A.R. (2023)
The Formation and Function of Plant Metabolons.
Plant Journal. 114(5): 1080-1092. • IF 7.091
Hayashi K., Alseekh S., Fernie A.R. (2023)
Genetic and epigenetic control of the plant metabolome.
Proteomics. 13: e2200104. • IF 5.911
Jia ZC., Das D., Zhang Y., Fernie A.R., Liu Y.G., Chen M., Zhang J. (2023)
Plant serine/arginine-rich proteins: versatile players in RNA processing.
Planta. 257(6): 109. • IF 4.54
Li X., Tieman D., Alseekh S., Fernie A.R., Klee H.J. (2023)
Natural variations in the Sl-AKR9 aldo/keto reductase gene impact fruit flavor volatile and sugar contents.
The Plant Journal. DOI: doi: 10.1111/tpj.16310. • IF 7.091
Natale R., Coppola M., D’Agostino N., Zhang Y., Fernie A.R., Castaldi V., Rao R. (2023)
In silico and in vitro approaches allow the identification of the Prosystemin molecular network.
Computational and Structural Biotechnology Journal. 21: 212-223. • IF 7.271
Poplawski P., Alseekh S., Jankowska U., Skupien-Rabian B., Iwanicka-Nowicka R., Kossowska H., Fogtman A., Rybicka B., Bogusławska J., Adamiok-Ostrowska A., Hanusek K., Hanusek J., Koblowska M., Fernie A.R., Piekiełko-Witkowska A. (2023)
Coordinated reprogramming of renal cancer transcriptome, metabolome and secretome associates with immune tumor infiltration.
Cancer Cell International. 23(1): 2. • IF 6.07
Salem M.A., El-Shiekh R.A, Aborehab N.M., Al-Karmalawy A.A., Ezzat S.M., Alseekh S., Fernie A.R. (2023)
Metabolomics driven analysis of Nigella sativa seeds identifies the impact of roasting on the chemical composition and immunomodulatory activity.
Food Chemistry. 398: 133906 • IF 9.231
Sarnowska E., Kubala S., Cwiek P., Sacharowski S., Oksinska P., Steciuk J., Zaborowska M., Szurmak J.M., Dubianski R., Maassen A., Stachowiak M., Huettel B., Ciesla M., Nowicka K., Alseekh S., Bucior E., Franzen R., Skoneczna A., Domagalska M.A., Amar S., Hajirezaei M.R., Siedlecki J.A., Fernie A.R., Davis S.J., Sarnowski T.J. (2023)
A non-canonical function of Arabidopsis ERECTA proteins and a role of the SWI3B subunit of the SWI/SNF chromatin remodeling complex in gibberellin signaling.
The Plant Journal. DOI: doi: 10.1111/tpj.16261. • IF 7.091
Schlossarek D., Zhang Y., Sokolowska E.M., Fernie A.R., Luzarowski M., Skirycz A. (2023)
Don’t let go: co-fractionation mass spectrometry for untargeted mapping of protein-metabolite interactomes.
Plant Journal. 113(5): 904-914. • IF 7.091
Sun Y., Alseekh S., Fernie A.R. (2023)
Plant secondary metabolic responses to global climate change: A meta-analysis in medicinal and aromatic plants.
Global Change Biology. 29(2): 477-504. • IF 13.211
Vallarino J.G, Hong J., Wang S., Wang X., Sade N., Orf I., Zhang D., Shi J., Shen S., Cuadros-Inostroza Á., Xu Q., Luo J., Fernie A.R., Brotman Y (2023)
Limitations and advantages of using metabolite-based genome-wide association studies: Focus on fruit quality traits.
Plant Science. 333: 111748. • IF 22.012
Zemach I., Alseekh S., Tadmor-Levi R., Fisher J., Torgeman S., Trigerman S., Nauen J., Hayut S.F., Mann V., Rochsar E., Finkers R., Wendenburg R., Osorio S., Bergmann S., Lunn J.E., Semel Y., Hirschberg J., Fernie A.R., Zamir D. (2023)
Multi-year field trials provide a massive repository of trait data on a highly diverse population of tomato and uncover novel determinants of tomato productivity.
The Plant Journal. DOI: doi: 10.1111/tpj.16268. • IF 7.091
Zhang Y., Fernie A.R. (2023)
Leveraging glycoside-targeted metabolomics to gain insight into biological function.
Trends in Plant Science. S1360-1385(23): 00130-9. • IF 22.012
Zhao H., He Y., Zhang K., Li S., Chen Y., He M., He F., Gao B., Yang D., Fan Y., Zhu X., Yan M., Giglioli-Guivarc’h N., Hano C., Fernie A.R., Georgiev M.I., Janovska D., Meglic V., Zhou M. (2023)
Rewiring of the seed metabolome during Tartary buckwheat domestication.
Plant Biotechnology Journal. 21(1): 150-164. • IF 13.263
Zhang Y., Chen M., Liu T., Qin K., Fernie A.R. (2023)
TECHNICAL ADVANCE: Investigating the dynamics of protein-protein interactions in plants.
Plant Journal. DOI: doi: 10.1111/tpj.16182. • IF 7.091
Zhang Y., Jaime M.S., Bulut M., Graf A., Fernie A.R. (2023)
The conditional mitochondrial protein complexes of Arabidopsis thaliana: differences between tissue-type and environmental conditions.
Plant Communications. (accepted)
Zhu F., Sun Y., Jadhav S.S., Cheng Y., Alseekh S., Fernie A.R. (2023)
The Plant Metabolic Changes and the Physiological and Signaling Functions in the Responses to Abiotic Stress.
Methods in Molecular Biology. 2642: 129-150.
Zhu F., Wen W., Cheng Y., Alseekh S., Fernie A.R. (2023)
Integrating multiomics data accelerates elucidation of plant primary and secondary metabolic pathways.
aBIOTECH. 4(1): 47-56.
2022
Ahouvi Y., Haber Z., Zach Y.Y., Rosental L., Toubiana D., Sharma D., Alseekh S., Tajima H., Fernie A.R., Brotman Y., Blumwald E., Sade N. (2023)
The alteration of tomato chloroplast vesiculation positively affects whole-plant source-sink relations and fruit metabolism under stress conditions.
Plant Cell Physiology. 63(12): 2008-2026. • IF 4.927
Amanda D., Frey F.P., Neumann U., Przybyl M., Šimura J., Zhang Y., Chen Z., Gallavotti A., Fernie A.R., Ljung K., Acosta I.F. (2022)
Auxin boosts energy generation pathways to fuel pollen maturation in barley.
Current Biology. 32(8): 1798-1811. • IF 10.834
Bovdilova. A., Alexandre B.M., Höppner. A., Luís I.M., AlvarezC.E., Bickel D., Gohlke H., Decker C., Nagel-Steger L., Alseekh S., Fernie A.R., DrincovichM.F., Abreu I.A., Maurino V.G. (2022)
Corrigendum to: posttranslational modification of the NADP-malic enzyme Involved in C4 photosynthesis modulates the enzymatic activity during the day.
The Plant Cell. 34:(1) 698-699. • IF 11.277
Fernie A.R., Alseekh S. (2022)
Metabolomic selection-based machine learning improves fruit taste prediction.
Proceedings of the National Academy of Sciences of the United States of America. 119 (9): e2201078119 • IF 12.779
Fernie A.R., Zhang Y. (2022)
The Bacillus subtilis glutamate anti-metabolon.
Nature Metabolism. 4: 161–162. • IF 19.865
Ishihara H., Alseekh S., Feil R., Perera P., George G.M., Niedźwiecki P., Arrivault S., Zeeman S.C., Fernie A.R., Lunn J.E., Smith A.M., Stitt M. (2022)
Rising rates of starch degradation during daytime and trehalose 6-phosphate optimize carbon availability.
Plant Physiology. 189(4): 1976–2000. • IF 8.005
Koschmieder J., Alseekh S, Shabani M., Baltenweck R., Maurino V.G., Palme K., Fernie A.R., Hugueney P., Welsch R. (2022)
Color recycling: metabolization of apocarotenoid degradation products suggests carbon regeneration via primary metabolic pathways.
Plant Cell Reports. 41: 961–977 • IF 4.570
Martínez-Rivas F.J., Blanco-Portales R., Molina-Hidalgo F.J., Caballero J.L., Perez de Souza L., Alseekh S., Fernie A.R., Muñoz-Blanco J., Rodríguez-Franco A. (2022)
Azacytidine arrests ripening in cultivated strawberry (fragaria × ananassa) by repressing key genes and altering hormone contents.
BMC Plant Biology. 22(1): 278. • IF 5.26
Rocchetti. L., Gioia. T., Logozzo. G., Brezeanu. C., Pereira L.G., la Rosa L., Marzario S., Pieri A., Fernie A.R., Alseekh S., Susek K., Cook D.R., Varshney R.K., Agrawal S.K., Hamwieh A., Bitocchi, E., Papa R. (2022)
Towards the development, maintenance and standardized phenotypic characterization of single-seed-descent genetic resources for chickpea.
Current protocols. DOI: https://doi.org/10.1002/cpz1.371
Powell A.F., Feder A., Li J., Schmidt M.H., Courtney L., Alseekh S., Jobson E.M, Vogel A., Xu Y, Lyon D., Dumschott K., McHale M., Sulpice R., Bao K., Lal R., Duhan A., Hallab A., Denton A.K., Bolger M.E., Fernie A.R., Hind S.R., Mueller L.A., Martin G.B., Fei Z., Martin C., Giovannoni J.J., Strickler S.R., Usadel B. (2022)
A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity
The Plant Journal. 110(6): 1791-1810. • IF 7.091
Salem M.A., Aborehab N.M., Al-Karmalawy A.A., Fernie A.R., Alseekh S., Ezzat S.M. (2022)
Potential valorization of edible nuts by-products: exploring the immune-modulatory and antioxidants effects of selected nut shells extracts in relation to their metabolic profiles.
Antioxidants. 11(3): 462. • IF 7.675
Sayed S.M.A., Alseekh S., Siems K., Fernie A.R., Luyten W., Schmitz-Linneweber C., Saul N. (2022)
Identification of a hydroxygallic acid derivative, zingibroside R1 and a sterol lipid as potential active ongredients of cuscuta chinensis extract that has neuroprotective and antioxidant effects in aged caenorhabditis elegans.
Nutrients. 14(19): 4199 • IF 6.706
Simeoni F., Skirycz A., Simoni L., Castorina G., De Souza L.P., Fernie A.R., Alseekh S., Giavalisco P., Conti L., Tonelli C., Galbiati M. (2022)
The AtMYB60 transcription factor regulates stomatal opening by modulating oxylipin synthesis in guard cells.
Scientific Report. 12: 533 • IF 4.379
Stefan T., Wu X.N., Zhang Y., Fernie A.R., Schulze W.X. (2022)
Regulatory Modules of Metabolites and Protein Phosphorylation in Arabidopsis Genotypes With Altered Sucrose Allocation.
Frontiers in Plant Science. DOI: doi: 10.3389/fpls.2022.891405. • IF 6.627
Tabatabaei I., Alseekh S., Shahid M., Leniak E., Wagner M., Mahmoudi H., Thushar S., Fernie A.R., Murphy K.M., Schmockel S.M., Tester M., Mueller-Roeber B., Skirycz A., Balazadeh S. (2022)
The diversity of quinoa morphological traits and seed metabolic composition.
Scientific Data. 9: 323. • IF 8.501
Vallarino J.G., Shameer S., Zhang Y, Ratcliffe G.R, Sweetlove J.L, Fernie A.R. (2022)
Leaf specific overexpression of a mitochondrially-targeted glutamine synthetase in tomato increased assimilate export resulting in earlier fruiting and elevated yield.
bioRxiv. DOI: https://doi.org/10.1101/2022.06.28.497938
Zhang Y., Fernie A.R. (2022)
Metabolite profiling of Arabidopsis mutants of lower glycolysis
Scientific Data. 9(1): 614. • IF 8.501
Zhang Y., Fernie A.R. (2022)
Dynamically regulating metabolic fluxes with synthetic metabolons.
Trends in Biotechnology. 40(9): 1019-1020 • IF 21.942
Zhou J., Liu C., Chen Q., Liu L., Niu S., Chen R., Li K., Sun Y., Shi Y., Yang C., Shen S., Li Y., Xing J,. Yuan H., Liu X., Fang C., Fernie A.R., Luo J. (2022)
Integration of rhythmic metabolome and transcriptome provides insights into the transmission of rhythmic fluctuations and temporal diversity of metabolism in rice.
Science China Life Sciences. 65: 1794–1810. • IF 10.372
Zhu F., Alseekh S., Wen W., Cheng Y., Fernie A.R. (2022)
Genome-wide association studies of arabidopsis dark-induced senescence reveals signatures of autophagy in metabolic reprogramming.
Autophagy. 18: 457-458. • IF 13.391
Zhu F., Alseekh S., Koper K., Tong H., Nikoloski Z., Naake T., Liu H., Yan J., Brotman Y., Wen W., Maeda H., Cheng Y., Fernie A.R. (2022)
Genome-wide association of the metabolic shifts underpinning dark-induced senescence in Arabidopsis.
The Plant Cell. 34(1): 557-578. • IF 11.277
Zhu F., Ahchige M.W., Brotman Y., Alseekh S., Zsogon A., Fernie A.R. (2022)
Bringing more players into play: leveraging stress in genome wide association studies.
Journal of Plant Physiology. 271: 153657. • IF 3.686
Zhu F., Jadhav S.S., Tohge T., Salem M.A., Li J.M., Giovannoni J.J., Cheng Y., Alseekh S., Fernie A.R. (2022)
A comparative transcriptomics and eQTL approach identifies SlWD40 as a tomato fruit ripening regulator.
Plant Physiology. 190(1): 250–266 • IF 8.005
2021
Alseekh S., Aharoni A., Brotman Y., Contrepois K., D’Auria J., Ewald C.J., Ewald J., Fraser P.D., Giavalisco P., Hall R.D., Heinemann M., Link H., Luo J., Neumann S., Nielsen J., Leonardo Souza P., Saito K., Sauer U., Schroeder C.F., Schuster, S., Siuzdak, G., Skirycz A., Sumner W.L., Snyder P.M., Tang H., Tohge T., Wang Y., Wen W., Wu S., Xu G., Nicola Zamboni N., R. Fernie A.R. (2021)
Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices.
Nature Methods. 18: 747–756 • IF 28.547
Alseekh S. and Fernie A.R. (2021)
Using Metabolomics to Assist Plant Breeding
Methods in Molecular Biology. 2264: 33-46.
Alseekh S., Scossa F., Wen W., Luo J., Yan J., Beleggia R., Klee H.J., Huang S., Papa R. and Fernie A.R. (2021)
Domestication of Crop Metabolomes: Desired and unintended consequences
Trends in Plant Science. Trends in Plant Science. 26(6): 650-661. • IF 18.313
Breitel D., Brett P., Alseekh S., Fernie A.R., Butelli, E., and Martin, C. (2021)
Diverting tyrosine: Data from untargeted metabolic analysis of tomato fruit accumulating L-DOPA
Metabolic Engineering. 34: 106678 • IF 9.783
Brotman Y., Llorente-Wiegand C., Oyong G., Badoni S., Misra G., Anacleto R., Parween S., Pasion E., Jr. Tiozon R.N., Anonuevo J.J., deGuzman, M.K., Alseekh, S., Mbanjo E.G.N., Boyd L.A., Fernie, A.R. and Sreenivasulu, N. (2021)
The genetics underlying metabolic signatures in a brown rice diversity panel and their vital role in human nutrition
The Plant Journal. DOI: https://doi.org/10.1111/tpj.15182 • IF 6.417
Di Vittori V., Bitocchi E., Rodriguez M., Alseekh S., Bellucci E., Nanni L., Gioia T., Marzario S., Logozzo G., Rossato M., De Quattro C., Murgia M.L., Ferreira J.J., Campa A., Xu C., Fiorani F., Sampathkumar A., Fröhlich A., Attene G., Delledonne M., Usadel B., Fernie A.R., Rau D. and Papa R. (2021)
Pod indehiscence in common bean is associated with the fine regulation of PvMYB26
Journal of Experimental Botany. 72: 1617-1633. • IF 6.992
Fernie A.R., Alseekh S., Liu J., Yan J. (2021)
Using precision phenotyping to inform de novo domestication
Plant Physiology. DOI: https://doi.org/10.1093/plphys/kiab160 • IF 8.340
Gutsch A., Hendrix S., Guerriero G., Renaut J., Lutts S., Alseekh S., Fernie A.R., Hausman J.F., Vangronsveld J., Cuypers A. and Sergeant K. (2020)
Long-Term Cd exposure alters the metabolite profile in stem tissue of Medicago sativa
Cells.9(12): 2707. • IF 6.600
Jiang L., Yoshida T., Stiegert S., Jing, Y., Alseekh S., Lenhard M., Pérez-Alfocea F., and Fernie A.R. (2021)
Multi-omics approach reveals the contribution of KLU to leaf longevity and drought tolerance
Plant Physiology. 185: 352-368. 185(2): 352–368
Joshi J., Hasnain G., Logue T., Lynch M., Wu S., Guan J.C, Alseekh S., Fernie A.R., Hanson A.D, McCarty D.R. (2021)
A Core Metabolome Response of Maize Leaves Subjected to Long-Duration Abiotic Stresses.
Metabolites. 11(11): 797. • IF 4.932
Krahmer J., Abbas A., Mengin V., Ishihara H., Romanowski A., Furniss J.J., Moraes T.A., Krohn N., Annunziata M.G., Feil R., Alseekh S., Obata T., Fernie A.R., Stitt M. and Halliday, K.J. (2021)
Phytochromes control metabolic flux, and their action at the seedling stage determines adult plant biomass
Journal of Experimental Botany. 72(8): 3263–3278. • IF 6.992
Perez de Souza L., Alseekh S., Scossa F., Fernie A.R. (2021)
Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research.
Nature Methods. (accepted) • IF 28.547
Ren Y., Li M., Guo S., Sun H., Zhao J., Zhang J., Liu G., He H., Tian S., Yu Y., Gong G., Zhang H., Zhang X., Alseekh S., Fernie A.R., Scheller H.V. and Xu Y. (2021)
Evolutionary gain of oligosaccharide hydrolysis and sugar transport enhanced carbohydrate partitioning in sweet watermelon fruits
The Plant Cell. https://doi.org/10.1093/plcell/koab055 • IF 11.277
Scossa F., Alseekh S. and Fernie A.R. (2021)
Integrating multi-omics data for crop improvement
Journal of Plant Physiology. 257: 153352. • IF 3.549
Staykov N.S., Angelov M., Petrov V., Minkov P., Kanojia A., Guinan K.J., Alseekh S., Fernie A.R., Neerakkal S., Gechev T.S. (2021)
An Ascophyllum nodosum-derived biostimulant protects model and crop plants from oxidative stress
Metabolites. 11(1): 24. • IF 4.932
Wu S., Alseekh S., Brotman Y., and Fernie A.R. (2021)
Metabolomic analysis of natural variation in Arabidopsis
Methods in Molecular Biology. 2200: 393-411. • IF 10.71
Zimmermann S., Benstein M.R., Flores-Tornero, Samira Blau S., Anoman A., Rosa-Téllez A.S., Gerlich C.S., Salem A.M., Alseekh S., Kopriva, S., Vera Wewer, V., Flügge U., Jacoby P.R., Fernie A.R., Giavalisco P., Roc Ros R., Krueger S. (2021)
The phosphorylated pathway of serine biosynthesis links plant growth with nitrogen metabolism.
Plant Physiology. https://doi.org/10.1093/plphys/kiab167 • IF 8.340
2020
Aksenov A.A., Laponogov I., Zhang Z., Doran S.L.F., Belluomo I., Veselkov D., Bittremieux W., Nothias L.F., Nothias-Esposito M., Maloney K.N., Misra B.B., Melnik A.V., Smirnov A., Du X., Jones II K.L., Dorrestein K., Panitchpakdi M., Ernst M., van der Hooft J.J.J., Gonzalez M., Carazzone C., Amézquita A., Callewaert C., Morton J.T., Quinn R.A., Bouslimani A., Orio A.A., Petras D., Smania A.M., Couvillion S.P., Burnet M.C., Nicora C.D., Zink E., Metz T.O., Artaev V., Humston-Fulmer E., Gregor R., Meijler M.M., Mizrahi I., Eyal S., Anderson B., Dutton R., Lugan R., Boulch P.L., Guitton Y., Prevost S., Poirier A., Dervilly G., Le Bizec B., Fait A., Persi N.S., Song C., Gashu K., Coras R., Guma M., Manasson J., Scher J.U., Barupal D.K., Alseekh S., Fernie A.R., Mirnezami R., Vasiliou V., Schmid R., Borisov R.S., Kulikova L.N., Knight R., Wang M., Hanna G.B., Dorrestein P.C., Veselkov K. (2020)
Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data.
Nature Biotechnology. • IF 36.558
Alseekh S., Ofner I., Liu Z., Osorio S., Vallarino J., Last R., Zamir D., Tohge T., Fernie A. (2020)
Quantitative trait loci analysis QTL of seed specialized metabolites reveals seed-specific flavonols and differential regulation of glycoalkaloid content in tomato
The Plant Journal. DOI: 10.1111/tpj.14879. • IF 6.141
Alseekh S., Perez de Souza L., Benina M., Fernie A. (2020)
The style and substance of plant flavonoid decoration; towards defining both structure and function
Phytochemistry. 174: 112347 • IF 3.044
Alseekh S., Scossa F., Fernie A. (2020)
Mobile transposable elements shape plant genome diversity
Trends in Plant Science. 28:S1360-1385(20)30250-8 • IF 14.416
Breitel D., Brett P., Alseekh S., Fernie A.R., Butelli E. and Martin C. (2020)
Metabolic engineering of tomato fruit enriched in L-DOPA
Metabolic Engineering.(In press, corrected proof). • IF 7.263
Chen M., Zhang Y., Chen X., Fernie A.R., Liu Y., Zhu F. (2020)
SWATH-MS based proteomics: Strategies and Applications in Plants
Trends in Biotechnology. DOI: 10.1016/j.tibtech.2020.09.002. • IF 14.343
Correa S.M., Alseekh S., Atehortúa L., Brotman Y., Ríos-Estepa R., Fernie A.R., Nikoloski Z. (2020)
Model-assisted identification of metabolic engineering strategies for Jatropha curcas lipid pathways
The Plant Journal. 104(1): 76-95. • IF 6.141
Correa S. M.; Fernie A.R.; Nikoloski Z.; Brotman Y. (2020)
Towards model-driven characterization and manipulation of plant lipid metabolism
Progress in Lipid Research. 80: 101051. • IF 15.083
Fernie A.R. and Alseekh S. (2020)
Tomato multiomics at aPEELing resolution
Nature Plants. 6: 1394-1395.
Jiao C., Sørensen I., Sun X., Sun H., Behar H., Alseekh S., Philippe G., Palacio Lopez K., Sun L., Reed R., Jeon S., Kiyonami R., Zhang S., Fernie A., Brumer H., Domozych D., Fei Z., Rose J. (2020)
The penium margaritaceum genome: Hallmarks of the origins of land plants
Cell. 181: 1097-1111 • IF 38.637
Kanojia A., Gupta S., Benina M., Fernie A., Mueller-Roeber B., Gechev T., Dijkwel P. (2020)
Developmentally controlled changes during Arabidopsis leaf development indicate causes for loss of stress tolerance with age
Journal of Experimental Botany. eraa347. • IF 5.908
Kuhalskaya A., Wijesingha Ahchige M., Perez de Souza L., Vallarino J., Brotman Y., Alseekh S. (2020)
Network analysis provides insight into tomato lipid metabolism
Metabolites. 10(4):152 • IF 4.097
Li Y., Chen Y., Zhou L., You S., Deng H., Chen Y., Alseekh S., Yuan Y., Fu R., Zhang Z., Su D., Fernie A., Yuan Y., Fu R., Zhang Z., Su D. (2020)
Microtom metabolic network: rewiring tomato metabolic regulatory network throughout the growth cycle
Molecular Plant. 13: 1203-1218 • IF 12.084
Omidbakhshfard M.A., Sujeeth N., Gupta S., Omranian N., Guinan K.J., Brotman Y., Nikoloski Z., Fernie A., Mueller-Roeber B., Gechev T. (2020)
A biostimulant obtained from the seaweed Ascophyllum nodosum protects Arabidopsis thaliana from severe oxidative stress
International Journal of Molecular Sciences. 21(2): 1–26. • IF 4.556
Perez De Souza L., Alseekh S., Brotman Y., Fernie A.R. (2020)
Network-based strategies in metabolomics data analysis and interpretation: from molecular networking to biological interpretation
Expert Review of Proteomics. 17(4): 243-255. • IF 6.614
Salem M.A., Perez de Souza L., Serag A., Fernie A.R., Farag MA, Ezzat SM, Alseekh S. (2020)
Metabolomics in the context of plant natural products research: From sample preparation to metabolite analysis
Metabolites. 10: E37. • IF 4.097
Salem, M.A., Radwan, R.A., Mostafa, E.S., Alseekh, S., Fernie, A.R. and Ezzat, S.M. (2020)
Using an UPLC/MS-based untargeted metabolomics approach for assessing the antioxidant capacity and anti-aging potential of selected herbs
RSC Advances. 10: 31511-31524.• IF 3.119
Salem M., Yoshida T., Perez de Souza L., Alseekh S., Bajdzienko K., Fernie A., Giavalisco P. (2020)
An improved extraction method enables the comprehensive analysis of lipids, proteins, metabolites and phytohormones from a single sample of leaf tissue under water-deficit stress
The Plant Journal. 103: 1614-1632. • IF 5.726
Sewelam N., Brilhaus D., Bräutigam A., Alseekh S., Fernie A.R., Maurino V.G. (2020)
Molecular plant responses to combined abiotic stresses put a spotlight on unknown and abundant genes
Journal of Experimental Botany. 71(16): 5098-5112. • IF 5.908
Shapiguzov A., Nikkanen L., Fitzpatrick D., Vainonen J., Gossens R., Alseekh S., Aarabi F., Tiwari A., Blokhina O., Panzarov K., Benedikty Z., Tyystjärvi E., Fernie A., Trtílek M., Aro E., Rintamäki E., Kangasjärvi J. (2020)
Dissecting the interaction of photosynthetic electron transfer with mitochondrial signalling and hypoxic response in the Arabidopsis rcd1 mutant
Philosophical Transactions of the Royal Society of London B, Biological Sciences. 375(1801):20190413. • IF 6.139
Staykov N.S., Angelov M., Petrov V., Minkov P., Kanojia A., Guinan K.J., Alseekh S., Fernie A.R., Neerakkal S., Gechev T.S. (2020)
An Ascophyllum nodosum-derived biostimulant protects model and crop plants from oxidative stress.
Metabolites. (accepted). • IF 4.097
Suzuki M., Wu S., Mimura M., Alseekh S., Fernie A., Hanson A., McCarty D. (2020)
Construction and applications of a B vitamin genetic resource for investigation of vitamin dependent metabolism in maize
Plant Journal. 101(2), 442–454. • IF 6.141
Toleco M.R., Naake T., Zhang Y., Heazlewood J.L., Fernie A.R. (2020)
Plant mitochondrial carriers: Molecular gatekeepers that help to regulate plant central carbon metabolism
Plants (Basel). 9(1). pii: E117. • IF 2.762
Wu S., Alseekh S., Brotman Y., Fernie A.R. (2020)
Metabolomic Analysis of Natural Variation in Arabidopsis.
Methods in Molecular Biology. 2200: 393-411. • IF 10.71
Zhang W., Zhang Y., Qiu H., Guo Y., Wan H., Zhang X., Scossa F., Alseekh S., Zhang Q., Wang P., Xu L., Schmidt M., Jia X., Li D., Zhu A., Guo F., Chen W., Ni D., Usadel B., Fernie A., Wen W. (2020)
Genome assembly of wild tea tree DASZ reveals pedigree and selection history of tea varieties
Nature Communications. 11 (1):3719. • IF 12.121
Zhang Y., Chen M., Toleco M.R., Jing Y., Strotmann V., Zhang J., Stahl Y., Fernie A.R. (2020)
A high efficiency method for Agrobacterium tumefaciens mediated transient transformation of plants with utility for high throughput screening of protein-protein interactions
Plant Communication. 1(5): 100028.
Zhang Y., Fernie (2020)
Metabolons, Enzyme-Enzyme Assemblies that Mediate Substrate Channeling, and Their Roles in Plant Metabolism
Plant communication. 100081
Zhang Y., Fernie A. (2020)
On the detection and functional significance of the protein – protein interactions of mitochondrial transport proteins
Biomolecules. 10 (8):e1107 • IF 4.082
Zhang Y., Fernie A. (2020)
Resolving the metabolon: is the proof in the metabolite?
EMBO Reports. 21: e50774 • IF 7.497
Zhang Y., Fernie A. (2020)
Stable and temporary enzyme complexes and metabolons involved in energy and redox metabolism
Antioxidants and Redox Signaling. DOI:10.1089/ars.2019.7981. (in press)
Zhang Y., Krahner I., Bolze A., Gibon Y., Fernie A. (2020)
Adenine nucleotide and nicotinamide adenine dinucleotide measurements in plants
Current Protocols in Plant Biology. 5(3):e20115
Zhang Y., Sampathkumar A., Kerbler S., Swart C., Seerangan K., Graf A., Alisdair R. (2020)
A novel glycolytic metabolon mediate the interaction between the mitochondria and chloroplast.
Nature Communication. (accepted). • IF 11.878
Zhang A., Sampathkumar A., Swart C., Graf A., Fernie A.R. (2020)
A moonlighting role for enzymes of glycolysis in the co-localization of mitochondria and chloroplasts
Nature communication. 11(1): 1-15. • IF 12.121
Zhang Y., Skirycz A., Fernie A. (2020)
An abundance and interaction encyclopedia of plant protein function
Trends in Plant Science. 25(7):627-630
Zhang Y., Natale R., Domingues A.P. Júnior, Toleco M.R., Siemiatkowska B., Fàbregas N., Fernie A.R. (2020)
Rapid identification of protein-protein interactions in plants
Current Protocols in Plant Biology. 4(4): e20099.
Zhu J., Lau K., Puschmann R., Harmel R.K., Zhang Y., Pries V., Gaugler Ph., Broger L., Dutta A.K., Jessen H., Schaaf G., Fernie A.R., Hothorn L.A., Fiedler D., Hothorn M. (2019)
Two bifunctional inositol pyrophosphate kinases/phosphatases control plant phosphate homeostasis
Elife 2019;8:e43582.
Zhu J., Loubéry S., Broger L., Zhang Y., Lorenzo-Orts L., Utz-Pugin A., Fernie A.R., YoungTae C. and Hothorn M. (2020)
A genetically validated approach to detect inorganic polyphosphates in plants
Plant Journal. 102(3): 507-516. • IF 6.141
2019
Boguslawska J., Poplawski P., Alseekh S., Koblowska M., Iwanicka-Nowicka R., Rybicka B., Kedzierska H., Gluchowska K., Hanusek K., Tanski Z., Fernie A.R., Piekielko-Witkowska A. (2019)
MicroRNA-mediated metabolic reprograming in renal cancer
Cancers. 11: 1825. • IF 6.162
Brog Y., Osorio S., Yichie Y., Alseekh S., Bensal E., Kochevenko A., Zamir D., Fernie A. (2019)
A Solanum neorickii introgression population providing a powerful complement to the extensively characterized Solanum pennellii population
Plant Journal. 97(2): 391–403. • IF 5.726
De Smet B., Willems P., Fernandez-Fernandez A., Alseekh S., Fernie A., Messens J., Van Breusegem F. (2019)
In vivo detection of protein cysteine sulfenylation in plastids
• IF 5.726
Plant Journal. 97(4): 765–778. Fang C., Fernie A., Luo J. (2019)
Exploring the diversity of plant metabolism
Trends in Plant Science. 24(1): 83–98. • IF 14.006
Fort A., Lebrault M., Allaire M., Esteves-Ferreira A., McHale M., Lopez F., Farinas Franco J., Alseekh S., Fernie A., Sulpice R. (2019)
Extensive variations in diurnal growth patterns and metabolism amongst Ulva spp strains
• IF 6.305
Plant Physiology. 180(1): 109–123. Li K., Wen W., Alseekh S., Yang X., Guo H., Li W., Wang L., Pan Q., Zhan W., Liu J., Li Y., Wu X., Brotman Y., Willmitzer L., Li J., Fernie A., Yan J. (2019)
Large-scale metabolite quantitative trait locus analysis provides new insights for high-quality maize improvement
Plant Journal. 99: 216-230. • IF 5.726
Liu T., Chen M., Zhang Y., Liu Y., Zhu F., Tian Y., Fernie A., Ye N., Zhang J. (2019)
Comparative metabolite profiling of two switchgrass ecotype varieties reveals differences in drought stress responses and rhizosheath size
Planta. 250: 1355–1369. • IF 3.060
Llorente C., Jimenez R., Jackie, Brotman Y., Fernie A., Sreenivasulu N. (2019)
Rice grain quality benchmarking through profiling of volatiles and metabolites in grains using gas chromatography mass spectrometry
Methods in Molecular Biology. 1892: 187–199. • IF 10.71
Pandey P.K., Yu J., Omranian N., Alseekh S., Vaid N, Fernie A.R., Nikoloski Z., Laitinen R.A.E. (2019)
Plasticity in metabolism underpins local responses to nitrogen in Arabidopsis thaliana populations
Plant Direct. 3(11): e00186. • IF 1.725
Perez de Souza L., Alseekh S., Naake T., Fernie A. (2019)
Mass spectrometry-based untargeted plant metabolomics
Current Protocols in Plant Biology. 4: e20100.
Reinholdt 0., Schwab S., Zhang Y., Reichheld J., Fernie A.R., Hagemann M., Timm S. (2019)
Redox-regulation of photorespiration through mitochondrial thioredoxin o1
Plant Physiology. 181(2): 442-457
Shapiguzov A., Vainonen J., Hunter K., Tossavainen H., Tiwari A., Jarvi S., Hellman M., Aarabi F., Alseekh S., Wybouw B., Van Der Kelen K., Nikkanen L., Krasensky-Wrzaczek J., Sipari N., Keinanen M., Tyystjarvi E., Rintamaki E., De Rybel B., Salojarvi J., Van Breusegem F., Fernie A., Brosche M., Permi P., Aro E., Wrzaczek M., Kangasjarvi J. (2019)
Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors
eLife. 8: e43284. • IF 7.551
Wang S., Alseekh S., Fernie A., Jie Luo J. (2019)
The structure and function of major plant Metabolite Modifications
Molecular Plant. 12(7): 899-919. • IF 10.812.